Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq153 93.3 3e-14 seq66 91.5 1e-13 >seq5 Length=1768869 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| | | ||| |||||||| | ||| || ||||| | |||||| || || Sbjct 907599 CCTCCACGTAAGCGTAAAACCAAATGCAACGTGGATTCTTTTTGTATATTGTAGTCTGAA 907658 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||||||||||||| ||||||||||| || ||||| || | || Sbjct 907659 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGTGGA 907718 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | |||| || | ||| || || | || || Sbjct 907719 ATACCTTCTTTATCTTGGATTTTCGCTTTTACGTTTTCAATGGTATCAGAGGGTTCCACT 907778 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| || || ||||||||||||||||||||| Sbjct 907779 TCCAAAGTGATCGTCTTTCCTGTGAGGGTTTTCACAAAAATTTGCATT 907826 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||| | ||||| || | ||| |||||||| | ||||| || ||| Sbjct 909652 CCTCCTCTCAGTCGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAC 909711 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||||||||| ||||| || | || |||||||| | || Sbjct 909712 AGGGTCCTGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 909771 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| || | ||||| | ||| |||||| | ||||| Sbjct 909772 ATTCCTTCTTTATC-CTGAATTTTAGCCTTGACATTTTCAATTGTGTCAGATGGTTCGAC 909830 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| |||||||| || | ||||| || ||||| ||||| Sbjct 909831 TTCCAAAGTTATTGTTTTTCCTGTCAATGTTTTGACGAAAATCTGCAT 909878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||| | ||||| || | ||| |||||||| | ||||| || ||| Sbjct 908511 CCTCCTCTCAGTCGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAC 908570 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||||||||| ||||| || | || ||||| || | || Sbjct 908571 AGGGTCCTGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGA 908630 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| || | ||||| | | | |||||| | || || Sbjct 908631 ATACCTTCTTTATC-CTGAATTTTAGCCTTGACATTCTCGATTGTGTCTGATGGTTCAAC 908689 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||| ||||| || | ||||| || ||||||||||| Sbjct 908690 TTCCAAAGTTATAGTCTTTCCTGTCAATGTTTTGACGAAAATTTGCAT 908737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||| | ||||| || | ||| |||||||| | ||||| || ||| Sbjct 908967 CCTCCTCTCAGTCGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAC 909026 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||||||||| ||||| || | || ||||| || | || Sbjct 909027 AGGGTCCTGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGA 909086 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| || | ||||| | | | |||||| | || || Sbjct 909087 ATACCTTCTTTATC-CTGAATTTTAGCCTTGACATTCTCGATTGTGTCTGATGGTTCAAC 909145 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||| ||||| || | ||||| || ||||||||||| Sbjct 909146 TTCCAAAGTTATAGTCTTTCCTGTCAATGTTTTGACGAAAATTTGCAT 909193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| | ||||| || | |||| |||||||| | ||| ||||| || Sbjct 909880 CCTCCTCTCAATCTAAGTACCAAGTGAAGAGTGGATTCCTTTTGAATATTATAATCAGAT 909939 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || || | ||||||||||||||| || | || ||||| || | || Sbjct 909940 AAGGTGCGTCCATCTTCTAGTTGTTTGCCGGCAAAGATAAGACGTTGTTGGTCTGGAGGG 909999 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| || | || || | | | |||||| | || || Sbjct 910000 ATACCTTCCTTATC-CTGTATTTTAGCCTTAACATTTTCGATTGTGTCAGATGGTTCAAC 910058 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || ||||| || | ||||| |||||||| ||||| Sbjct 910059 TTCCAAAGTTATTGTCTTTCCTGTCAATGTTTTAACAAAAATCTGCAT 910106 >seq153 Length=365504 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| |||||| || | ||||| ||||||||||||||| | || || Sbjct 156793 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCCTC 156852 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| ||||| ||||| || |||| || || || || | || | || || || || Sbjct 156853 CAACTGTTTACCGGCGAAGATCAGACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTG 156912 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| ||||||| | | | ||||| | |||||| || | || || || || Sbjct 156913 GATTTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCGACCTCAAGAGTGATGGTCTT 156972 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || |||||||| |||||||||||| Sbjct 156973 GCCAGTCAGCGTTTTCACGAAAATTTGCATT 157003 >seq66 Length=580730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||| | | ||||| || | ||| || ||||| | ||| |||||||| Sbjct 317518 CCTCCACGCAAACGAAGAACCAAGTGCAATGTGGATTCTTTTTGAATATTATAATCGGAT 317577 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | |||||||||||| ||||| | || || || || | || Sbjct 317578 AAGGTACGACCATCCTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCTGGGGGG 317637 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| | || || | ||| ||||| || ||||| Sbjct 317638 ATACCTTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCGACT 317697 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||||| |||||| || ||||| |||||| Sbjct 317698 TCCAGAGTGATTGTTTTCCCGGTTAAAGTTTTGACGAAAATCTGCATT 317745 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| | |||||||| | || ||||| || | ||||| || || Sbjct 319346 CCTCCCCTCAATCTGAGTACCAAATGAAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAA 319405 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | |||||| ||||| ||||| | || || ||||| | || Sbjct 319406 AGAGTTCTTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 319465 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | || || | ||| ||||| | ||||| Sbjct 319466 ATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCAGAGGGTTCGACT 319525 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||||||||||| |||||| || ||||| |||||| Sbjct 319526 TCCAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCATT 319573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381355363353654