Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq66 91.5 1e-13 seq163 86.0 5e-12 seq5 86.0 5e-12 >seq66 Length=580730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| | |||| || | ||||| ||||| ||||| ||||| || | Sbjct 317744 TTCCTCCCCTCAACCTGAGTACCAAATGAAGTGTAGATTCCTTCTGAATGTTGTAGTCAG 317803 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | | ||||| || |||||||| || |||| || | |||||||| || Sbjct 317804 AAAGAGTTCTTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGG 317863 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| ||||| ||||| | | | || || ||| || Sbjct 317864 GAATACCTTCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCAGAAGGTTCGA 317923 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || || ||||| || ||||||||||| || ||||| |||||| Sbjct 317924 CTTCCAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATT 317973 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| | || | || | ||||| ||||| ||||| ||||| || | Sbjct 317972 TTCCTCCCCTCAACCTGAGTACTAAATGAAGTGTAGATTCCTTCTGAATGTTGTAGTCAG 318031 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | | || || || |||||||| || |||| || | ||||||||| || Sbjct 318032 AAAGAGTTCTTCCATCTTCAAGTTGTTTACCGGCGAAAATGAGACGCTGCTGATCTGGGG 318091 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| ||||| ||||| | | | || || ||| || Sbjct 318092 GAATACCTTCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATGGTGTCAGAAGGTTCGA 318151 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 318152 CTTCCAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCATT 318201 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| | |||| || | ||||| ||||| ||||| ||||| || | Sbjct 318660 TTCCTCCCCTCAACCTGAGTACCAAATGAAGTGTAGATTCCTTCTGAATGTTGTAGTCAG 318719 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | | ||||| || |||||||| || |||| || | |||||||| || Sbjct 318720 AAAGAGTTCTTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTG-GG 318778 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| || || ||||| | | | || || ||| || Sbjct 318779 GAATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCAGAAGGTTCAA 318838 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 318839 CTTCCAGAGTAATTGTTTTTCCAGTTAAAGTTTTTACGAAAATCTGCATT 318888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| | |||| || | ||||| ||||| ||||| ||||| || | Sbjct 319116 TTCCTCCCCTCAACCTGAGTACCAAATGAAGTGTAGATTCCTTCTGAATGTTGTAGTCAG 319175 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | | ||||| || |||||||| || |||| || | |||||||| | Sbjct 319176 AAAGAGTTCTTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGCG 319235 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| || || ||||| | | | || || ||| || Sbjct 319236 GAATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCAGAAGGTTCGA 319295 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 319296 CTTCCAGAGTAATTGTTTTTCCAGTTAAAGTTTTTACGAAAATCTGCATT 319345 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| | |||| || | ||||| ||||| ||||| ||||| || | Sbjct 319572 TTCCTCCCCTCAACCTGAGTACCAAATGAAGTGTAGATTCCTTCTGAATGTTGTAGTCAG 319631 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | | ||||| || |||||||| || |||| || | |||||||| || Sbjct 319632 AAAGAGTTCTTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGG 319691 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| || || ||||| | | | || || ||| || Sbjct 319692 GAATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCAGAAGGTTCGA 319751 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||| ||||| || ||||||||||| || ||||| ||||| Sbjct 319752 CTTCCAGAGTAATTGTTTT-CCAGTTAAAGTTTTTACGAAAATCTGCAT 319799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 |||||| ||||| | | |||| |||||| || || || ||||||||||| ||||| | Sbjct 317517 TCCTCCACGCAAACGAAGAACCAAGTGCAATGTGGATTCTTTTTGAATATTATAATCGGA 317576 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | || | ||||| || ||||| || || ||||||| | ||||| || ||| Sbjct 317577 TAAGGTACGACCATCCTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCTGGGGG 317636 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || || ||||| ||| || ||||| | | | || || ||| || Sbjct 317637 GATACCTTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCGAC 317696 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || || ||||| || |||||||||||||| ||||| |||||| Sbjct 317697 TTCCAGAGTGATTGTTTTCCCGGTTAAAGTTTTGACGAAAATCTGCATT 317745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||| || | |||| || | ||||| ||||| ||||| ||||| || | Sbjct 318887 TTCCTCCCCTCAATCTGAGTACCAAATGAAGTGTAGATTCCTTCTGAATGTTGTAGTCAG 318946 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | | ||||| || |||||||| || |||| || | |||||||| || Sbjct 318947 AAAGAGTTCTTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGG 319006 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| || || ||||| | | | || || ||| | || Sbjct 319007 GAATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCAGAAGGGTTCG 319066 Query 18993 T-TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 319067 ACTTCCAGAGTAATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCATT 319117 >seq163 Length=338633 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 21141 GTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTGGTGCG 21199 |||||||| |||||| || || || | || || ||| || | |||| ||| || | Sbjct 122853 GTTGCCCAAATCGCCTACATGACGGCTTTCGTCGCAAGGACCGGCATGATCCTTGTTGTG 122912 Query 21200 TAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGAA 21259 ||||| || || | |||||||| ||||||||||| || |||||||||| ||||||| Sbjct 122913 G-GGGTTGAAATGTGCCCCGGCGGAGATGCAGCCGTTGGTGTTGTCGCCGAATTCGTGAA 122971 Query 21260 CGTGAAAGCCGTGCAGTCC 21278 | || |||||||| || || Sbjct 122972 CATGGAAGCCGTGAAGACC 122990 >seq5 Length=1768869 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | || | |||| |||| ||||| |||||||| || || ||||| | Sbjct 910562 TTCCTCCTCGAAGTCTCAGTACCAAATGCAGTGTAGATTCCTTTTGGATGTTATAATCAG 910621 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || |||| || || ||||| || ||| | || || | || ||||| || Sbjct 910622 ACAAGGTGCGTCCGTCTTCTAGTTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGGG 910681 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || ||||| || |||||| ||||| | | | ||||| || ||| Sbjct 910682 GAATACCTTCTTTATCCTGAATTTTTGCCTTTACATTCTCAATTGTATCTGAGGGTTCCA 910741 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || ||||||||||| ||||| || |||||||| || |||||| Sbjct 910742 CTTCTAAAGTGATGGTTTTACCAGTTAATGTCTTGACAAAGATCTGCATT 910791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414557323867822