Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq44 269 2e-67 >seq44 Length=686090 Score = 269 bits (298), Expect = 2e-67 Identities = 561/829 (68%), Gaps = 20/829 (2%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||||||||| | |||| | |||||||| |||||||||||||| ||| || || | Sbjct 254494 TTTTTGATATTCTCCAACTTTCTTTTCAAAGAAGTTTGTTTTTCCATCTGTAGAGATTAT 254553 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT-----TTTTTACACCCTAATTCT 12973 | ||| ||||| ||||||||| |||| | ||| || | |||||| |||||| Sbjct 254554 TGTCATGAAATCAAAAGGATTT-----ACAACATTATAAATCTTCTCACACCCCAATTCT 254608 Query 12974 AGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCT 13033 || ||||| ||||| |||||||| || || || |||||| | ||| ||||| || Sbjct 254609 GTCAATAATCTATCAGCCACAAACTCAATATATTGACACATTAATTTACAATTCATGCCA 254668 Query 13034 ATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATA 13093 ||||| | || || | ||| || || | || | || ||| || || || ||| | Sbjct 254669 ATTAAACTCACTGGTAAAGCATCAGTGAGGAATTCTTGTTCAATGATTACAGCATCGCGA 254728 Query 13094 ACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTA---AACATCATA 13150 | ||| ||| | || | || || ||| ||| || | | | ||||| | | Sbjct 254729 ATTATA---CTTGTCACTCTTTCCTTTGAAGGTTTTTGTACAAGGTAGGAGAACATTAAA 254785 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || |||||||||||||| | |||||||| || |||| ||| |||||||| |||| Sbjct 254786 CAAGCAAAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTTAAG 254845 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || |||||||| || | ||||| | ||| || || || ||||| || ||||| || Sbjct 254846 CCAGGCATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAGAAA 254905 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 || || ||||| || ||||| |||| | || |||||| | | ||| || || Sbjct 254906 ATGCCCTCAACAGCAGCAAAAGCTACAATTCTCTCACCAAAACTGGCATTCTTGCTGCTG 254965 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGC-AGTTCATATTTTCTATTGCGTT 13389 ||||| || ||||| | || || | |||||| | || | || |||| || || || Sbjct 254966 ATCCAGTTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAAT-GTTTCAATGGCATT 255024 Query 13390 AAATAAATAAtttttttCCTTACTG-TCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 || || |||| |||| | | | || || ||||| || || | | ||| |||| Sbjct 255025 GAA-AAGAAATTCTTTTTGATCCGGATCACTGATGTAAGTTTCAATTAGCATGCTGTACA 255083 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| || || ||||| || || || ||||| || |||||||| || ||||| || | | Sbjct 255084 TTTCAGAGTGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAGCTTCAGTGA 255143 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 |||| ||||| | || | ||| ||||||| ||||| || || || ||| || | Sbjct 255144 CCTGCACTTCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAGGCGG 255203 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 |||| |||||||| | ||| || || | |||| || |||| | ||| | ||||| Sbjct 255204 CAAAGAAAGCAAGGACGTGGGAGATGAAGTGCCTTTCATTGTCTGTTAGCTTGACCCAAT 255263 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 | ||| || || || || || || || |||||||| || || Sbjct 255264 GATCCAGATCCTTGGACAAGTCCACTTCTTCTGTTGTCCAAAATGAGGC 255312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430966311292326