Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1768 179 7e-41 seq201 95.1 2e-15 seq2804 93.3 8e-15 >seq1768 Length=13834 Score = 179 bits (198), Expect = 7e-41 Identities = 483/724 (67%), Gaps = 25/724 (3%) Strand=Plus/Minus Query 4338 TGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACAA 4397 ||| || ||||| | ||||| ||| || ||||| || || | || || ||||||| Sbjct 6047 TGTTGGTTACATATTAGAAGTGGATTTAGTGTATCCAGAAAAACTTCACCATTTACACAA 5988 Query 4398 AGATCTACCTTTATGCCCAGAACATTTTGTACCACCTG--GTAGCAAGCAACAA----AA 4451 ||| | ||| |||| ||||||||||| ||||||| | | | || || || Sbjct 5987 AGACTTGCCTCTATGTCCAGAACATTTGATACCACCCACAGCATCTTCGAAAAATCCTAA 5928 Query 4452 ACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACA 4511 | | |||||| | |||||||| || | ||| | ||||| |||| |||||| ||||| Sbjct 5927 ATTATTAACAACTTTATACGATAAGAAACAATATATCATTCATTATAGAAATTTAAAACA 5868 Query 4512 ATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATC 4571 || ||||||| | || | ||| | || | | |||||||| | ||||| Sbjct 5867 GGCACTATGTTTAGGTATCCAACTGATAAAAGTTCATCGCATTCTGAAATTTAACCAATC 5808 Query 4572 AGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAAC-TAGCTAAGAATG 4630 |||| | ||| | || || ||| ||||||| | |||||| ||| ||| | || Sbjct 5807 CCCCTGGATGAAAACCTACATAGATTTAAATACCAATTTACGAAAAGATAG-TAAAAGTG 5749 Query 4631 AGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGA 4690 | || |||||||| |||| |||||| |||||||| |||||||| || || || ||||||| Sbjct 5748 AATTTGAAAAAAAATTTTTTAAATTGATGAATAACGCGGTTTTCGGTAAAACTATGGAGA 5689 Query 4691 ATGTACGAAAATATAAAGA---TATA-TATTTAAGAACAAAGTGGCAAAGTCAATACAAT 4746 | || || ||||||||||| || | | ||| | ||| ||| || |||| | Sbjct 5688 ACGTTCGGAAATATAAAGAAGTTAAACTTGTTACG--CAA--TGGTCTGGTAGATACGGT 5633 Query 4747 GTATCGGATTTAGTATGTAGACCAAACTTCCACAGCCTTACAATTTTTGATGAGGATATG 4806 || | || | | | | | ||||| ||||| | |||||||| ||||| || Sbjct 5632 TTAAAAGCTTGCATTTCCAAATCGAACTTTCACAGTTTAACAATTTTCGATGA--AT--- 5578 Query 4807 GTTATAGTTGAACTTAAAAAAGCTAGA-GTTTGCTTCAACAAGCCGATCTATGTAGGGTT 4865 ||||| |||||| | |||||| || | | |||||||| || || || || || || Sbjct 5577 GTTATTGTTGAA-ATGAAAAAGTTAAACATCAAGTTCAACAAACCTATTTACGTTGGATT 5519 Query 4866 TAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCATTACAATTATGT-TATGC 4924 | || || ||| |||| |||| | | ||||| |||||||| ||||| | | | Sbjct 5518 TTCAATTTTGGATATATCAAAAACCATTTTGTATGATTTTCATTATAATTACATCAAACC 5459 Query 4925 AAAATTATGTAAATACCTCAAAATTATTGTACACTGACACAGATAGTCTAATTTACCAAT 4984 ||| || | || || | || || |||| || || || ||| | ||||||| |||| Sbjct 5458 AAAGTTCAATGAAAACGTTAAGCTT-CTGTATACAGATACGGATTCTTTAATTTATCAAT 5400 Query 4985 TTAATGTACCCAACATCTATGAAGACATCAAACGTGATATTTCAAGGTTTGATACCTCCA 5044 | ||||| | || ||| || | ||| | ||||| || |||||||| ||| Sbjct 5399 TCAATGTTGAAGATATTTATCAATATATCGGAGAAGATATAGAAAAATTTGATACATCCG 5340 Query 5045 ATTA 5048 |||| Sbjct 5339 ATTA 5336 Score = 93.3 bits (102), Expect = 8e-15 Identities = 185/268 (69%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 3323 CAACTGAGTGTCACATCTGT-GAAAAGCCTATAACATCTCCTACAGAT---AAAGTTTAT 3378 |||| | |||||||| ||| ||||| | | | ||| | | ||||| ||||| Sbjct 7078 CAACCGTATGTCACATTTGTCGAAAACCATTTGACAGTTTAT-CAGATGAAAAAGTAAGA 7020 Query 3379 GATCATTGTCACTTTACGGGTAACTACAGAGATGCTGCACATAAATCCTGTAACGTTAAT 3438 ||||||||||| |||||||| || || || | ||||||||||| ||||| | ||| Sbjct 7019 GATCATTGTCATTTTACGGGAAAATATAGGGGAAGTGCACATAAATTATGTAATTTAAAT 6960 Query 3439 TATCAAAAATCTACCATTATCCCAGTTGTCTTTCATAATTTATCCGGCTATGATTCCCAC 3498 ||| || | | | || || || || | ||||| || | ||||| |||||| ||| Sbjct 6959 TATAAAGACGATGCAATGATTCCCGTCATATTTCACAACCTCTCCGGTTATGATAGTCAC 6900 Query 3499 TTCATAATTAAGTCCTTAGCTACAGTATTTGAAGGTGAAATTTCAT-TACTACCGATCAA 3557 || | |||| || ||||||||| | || || || | | || |||| ||| |||| Sbjct 6899 TTTTTTATTAGATCACTAGCTACAGAAATT-TCGGGGAGAATAAATCTACTTCCGGTCAA 6841 Query 3558 TAAAGAACGTTACATTTCTTTCACaaaa 3585 |||||| || ||||| || |||||| Sbjct 6840 CAAAGAAAAGTATATTTCATTTACAAAA 6813 >seq201 Length=286968 Score = 95.1 bits (104), Expect = 2e-15 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 7947 TAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCGGGTA 8006 |||| | || || ||||||||| | || | || || |||||||| ||||| ||||||| Sbjct 1125 TAATTGATAAACTACCACTTGAATTACATCTGCCTGGATATCAGTATTGCGGGCCGGGTA 1066 Query 8007 CAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCTGCGT 8066 |||| |||| || |||| | | |||||| || | ||||||||||| ||||| | Sbjct 1065 CAAAATTAGAGGAGCGATTGCGTAGTGGTGATCAGGGGGTGAATCCTTTGGATGCTGCAT 1006 Query 8067 GTAAGGAACACGATATAGCTTACTCAAAAA 8096 |||| | |||||||| |||||| |||| Sbjct 1005 GTAAAAAGCACGATATCTCTTACTTGAAAA 976 >seq2804 Length=5808 Score = 93.3 bits (102), Expect = 8e-15 Identities = 185/268 (69%), Gaps = 7/268 (3%) Strand=Plus/Plus Query 3323 CAACTGAGTGTCACATCTGT-GAAAAGCCTATAACATCTCCTACAGAT---AAAGTTTAT 3378 |||| | |||||||| ||| ||||| | | | ||| | | ||||| ||||| Sbjct 4807 CAACCGTATGTCACATTTGTCGAAAACCATTTGACAGTTTAT-CAGATGAAAAAGTAAGA 4865 Query 3379 GATCATTGTCACTTTACGGGTAACTACAGAGATGCTGCACATAAATCCTGTAACGTTAAT 3438 ||||||||||| |||||||| || || || | ||||||||||| ||||| | ||| Sbjct 4866 GATCATTGTCATTTTACGGGAAAATATAGGGGAAGTGCACATAAATTATGTAATTTAAAT 4925 Query 3439 TATCAAAAATCTACCATTATCCCAGTTGTCTTTCATAATTTATCCGGCTATGATTCCCAC 3498 ||| || | | | || || || || | ||||| || | ||||| |||||| ||| Sbjct 4926 TATAAAGACGATGCAATGATTCCCGTCATATTTCACAACCTCTCCGGTTATGATAGTCAC 4985 Query 3499 TTCATAATTAAGTCCTTAGCTACAGTATTTGAAGGTGAAATTTCAT-TACTACCGATCAA 3557 || | |||| || ||||||||| | || || || | | || |||| ||| |||| Sbjct 4986 TTTTTTATTAGATCACTAGCTACAGAAATT-TCGGGGAGAATAAATCTACTTCCGGTCAA 5044 Query 3558 TAAAGAACGTTACATTTCTTTCACaaaa 3585 |||||| || ||||| || |||||| Sbjct 5045 CAAAGAAAAGTATATTTCATTTACAAAA 5072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97970836364902