Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq44 286 4e-72 seq202 89.7 5e-13 >seq44 Length=686090 Score = 286 bits (316), Expect = 4e-72 Identities = 599/887 (68%), Gaps = 36/887 (4%) Strand=Plus/Plus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATT 21184 |||||||||||||||||| || || || | || | | | | || | ||| | | Sbjct 254441 ATTTAAAAATCAGCATCTGTAGAAAATACTGTGTCAT-----TGTCA-ATCACTCCAACT 254494 Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| || | |||| | ||||| || || ||||| ||||| || || || |||| Sbjct 254495 TTTTGATATTCTCCAACTTTCTTTTCAAAGAAGTTTGTTTTTCCATC---TG-TAGAGAT 254550 Query 21245 TC----CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300 | ||| |||||||| |||||| || ||| | || || | ||| |||| ||||| Sbjct 254551 TATTGTCATGAAATCAAAAGGATTTACAACATTATAAATCTTCTCACACCCCAATTCTGT 254610 Query 21301 TAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 ||||||||||| || ||||| || ||||||||||||||||||| ||||||||| || || Sbjct 254611 CAATAATCTATCAGCCACAAACTCAATATATTGACACATTAATTTACAATTCATGCCAAT 254670 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 || | || || | ||| | || | || || ||| || || || || ||| Sbjct 254671 TAAACTCACTGGTAAAGCATCAGTGAGGAATTCTTGTTCAATGATTACAGCATCGCGAAT 254730 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAA--TAATTGTTTAAACATC 21472 |||| || | | |||| || | | | ||||| || | ||||| Sbjct 254731 TATACTTGTCACTCTTTCCTTTGAAGGTTTTTG----TACAAGGTAGGAG----AACATT 254782 Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| ||||||||||| || | |||||||||||| ||||| ||||| ||||| ||| Sbjct 254783 AAACAAGCAAAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTT 254842 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 || || ||||| | || |||||||| | ||| || |||| ||||| || |||||| Sbjct 254843 AAGCCAGGCATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAG 254902 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTTATC 21651 |||||||||||||| |||||||| || || | || ||||| | | | |||||| | Sbjct 254903 AAAATGCCCTCAACAGCAGCAAAAGCTACAATTCTCTCACCAAAACTGGCATTCTTGCTG 254962 Query 21652 CAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGC 21711 | ||||| || |||||||| ||||| | ||||| |||| | ||| ||||| || Sbjct 254963 C-TGATCCAGTTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAATGTTTCAATGGC 255021 Query 21712 TTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATA 21771 || |||||| | ||||| ||| ||| | ||| || || Sbjct 255022 ATTGAAAAGAAATTCTTTTTGATCCGGATCACTGATGTAAGTTTCAATTAGCATGCTGTA 255081 Query 21772 CATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC--T 21829 ||||||||| || ||||| || || || || |||||||| ||||| || || || || | Sbjct 255082 CATTTCAGAGTGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAGCTTCAGT 255141 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 || | || || || || |||| | ||||| || || || || |||||| | Sbjct 255142 GACC--TGCACTTCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAG 255199 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 |||||||| || || | | | || || | | ||| || ||||||| || | Sbjct 255200 GCGGCAAAGAAAGCAAGGACGTGGGAGATGAAGTGCCTTTCATTGTCTGTTAGCTTGACC 255259 Query 21950 CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 |||| | ||| || || || || |||||||| ||||||||||| Sbjct 255260 CAATGATCCAGATCCTTGGACAAGTCCACTTCTTCTGTTGTCCAAAA 255306 >seq202 Length=286848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 131855 ATTAATCCTATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAA 131914 |||||| ||||| ||||| ||| ||| | || ||| ||| ||||| | || || Sbjct 14530 ATTAATGTCATGACACCTGTGTTACCAATGCTTGCAAATGCCTGCAAATCTGTGCAACAA 14471 Query 131915 GCAATAGATAAA---TATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGT 131971 || || |||| | | |||| |||||||| || |||||||||||||||| ||| Sbjct 14470 GCCAT---TAAAGCTTGTCCTAATGGCATGTATTCTGAAATAAAATATGATGGGGAACGT 14414 Query 131972 GTACAAATTCATAAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTT 132031 ||||| |||||||| | | | || || || |||||| | ||||||||||| ||| Sbjct 14413 GTACAGGTTCATAAACAGGGAACTGAATTTAAATATTTTTCACGTAATTTAAAACCAGTT 14354 Query 132032 CTTACTCATAAAATTG 132047 | |||||||||| Sbjct 14353 TTGCAGCATAAAATTG 14338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531880434848120