Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq44 405 6e-108 seq5 125 8e-24 seq707 123 3e-23 seq110 123 3e-23 seq142 120 3e-22 seq161 118 1e-21 seq49 118 1e-21 >seq44 Length=686090 Score = 405 bits (448), Expect = 6e-108 Identities = 682/985 (69%), Gaps = 19/985 (2%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| ||||| |||||| | |||||| ||||| || | || || ||| Sbjct 254443 TTAAAAATCAGCATCTGTAGAAAATACTGTGTCA---------TTGTCAATCACTCCAAC 254493 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 |||||| ||||| |||||||| ||||||||||| ||||| ||||| || ||| || Sbjct 254494 TTTTTGATATTCTCCAACTTTCTTTTCAAAGAAGTTTGTTTTTCCATCTGTAGAGATT-- 254551 Query 92862 ATTCACTAGTGATT----GGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTAC 92917 ||| | | || ||||| | |||||| ||| |||| ||| || | Sbjct 254552 ATTGTCATGAAATCAAAAGGATTTACAACATTATAAATCTTCTCACACCCCAATTCTGTC 254611 Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||||||||||||| ||||| || || || ||| |||| || | ||||||||| || | Sbjct 254612 AATAATCTATCAGCCACAAACTCAATATATTGACACATTAATTTACAATTCATGCCAATT 254671 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | || || |||| ||| || || | ||| |||| || || | || || || | Sbjct 254672 AAACTCACTGGTAAAGCATCAGTGAGGAATTCTTGTTCAATGATTACAGCATCGCGAATT 254731 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 || | | ||||| |||| ||||||||||| | || | ||||||| || ||| Sbjct 254732 ATACTTGTCACTCTTTCCTTTGAAGGTTTTTGTACAAGGTAGGAGAACATTAAACAAGCA 254791 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || |||| |||||| || | ||| || |||||||| || ||||| || || Sbjct 254792 AAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTTAAGCCAGGC 254851 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | || || | || |||||||| || |||| |||||||| |||||||| || || || Sbjct 254852 ATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAGAAAATGCCC 254911 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || || ||||| || ||||| | || ||||| | || || ||||||||||| Sbjct 254912 TCAACAGCAGCAAAAGCTACAATTCTCTCACCAAAACTGGCATTCTTGCTGCTGATCCAG 254971 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || || ||||| || || || || |||| |||||||| |||||| || || || || || Sbjct 254972 TTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAATGTTTCAATGGCATTGAAAAGA 255031 Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 | ||| | |||| ||| | ||||| || || |||| || ||||||||||| Sbjct 255032 AATTCTTTTTGATCCGGATCACTGATGTAAGTTTCAATTAGCATGCTGTACATTTCAGAG 255091 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 |||| |||||| || |||||||| ||||| || || || |||||||| |||| ||||||| Sbjct 255092 TGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAGCTTCAGTGACCTGCACT 255151 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 ||||| || | || || | || || || || |||||||| || || ||||| ||| Sbjct 255152 TCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAGGCGGCAAAGAAA 255211 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT--A 93575 || | | || || || || | |||| ||| | ||||| |||||| ||| | Sbjct 255212 GCAAGGACGTGGGAGATGAAGTGCCTTTCATTGTCTGTTAGCTTGACCCAAT--GATCCA 255269 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 |||| || || | || |||||||| |||||||| || |||||||||| ||||| Sbjct 255270 GATCCTTGGACAAGTCCACTTCTTCTGTTGTCCAAAATGAGGCTTCTGCTTCCTTGTATT 255329 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | |||| || ||| | |||||||| || || || ||||| ||| ||||| ||| | | Sbjct 255330 TGGCCCAAATATCTGGGTATTGAATGGGGAAAATAACAAATCGACGTGGGTTCTCTCTAA 255389 Query 93696 GTAACGGCTCTAGTTGTGGGTCAAA 93720 | ||||| || |||| || ||||| Sbjct 255390 GCAACGGTTCCAGTTCGGGATCAAA 255414 >seq5 Length=1768869 Score = 125 bits (138), Expect = 8e-24 Identities = 89/101 (88%), Gaps = 7/101 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||| Sbjct 924626 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGC 924567 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA-----TTATTATTG 126358 ||||||||||||||||||||||||||| ||||||||| Sbjct 924566 GTGGGTTCGAACCCCACACCTGACAAACATTTTTATTATTG 924526 >seq707 Length=73165 Score = 123 bits (136), Expect = 3e-23 Identities = 80/87 (92%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||| Sbjct 45292 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGC 45233 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 45232 GTGGGTTCGAACCCCACACCTGACAAA 45206 >seq110 Length=463832 Score = 123 bits (136), Expect = 3e-23 Identities = 90/102 (88%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||| Sbjct 219051 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGC 219110 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTT 126364 ||||||||||||||||||||||||||| | || || ||||| Sbjct 219111 GTGGGTTCGAACCCCACACCTGACAAACT-TTTTTCAAATTT 219151 >seq142 Length=387161 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||| Sbjct 149677 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGC 149736 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 149737 GTGGGTTCGAACCCCACACCTGACA 149761 >seq161 Length=347254 Score = 118 bits (130), Expect = 1e-21 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||| Sbjct 280450 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGCG 280509 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 280510 TGGGTTCGAACCCCACACCTGACA 280533 >seq49 Length=654735 Score = 118 bits (130), Expect = 1e-21 Identities = 85/96 (89%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||| Sbjct 76176 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGC 76235 Query 126323 GTGGGTTCGAA-CCCCACACCTGACAAATTATTATT 126357 ||||||||||| |||||||||||||||| | || || Sbjct 76236 GTGGGTTCGAACCCCCACACCTGACAAACTTTTTTT 76271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556839479192120