Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq44 125 1e-23 >seq44 Length=686090 Score = 125 bits (138), Expect = 1e-23 Identities = 298/445 (67%), Gaps = 4/445 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| ||||||||||| || || || || |||||| | | |||||| Sbjct 255216 CTTGCTTTCTTTGCCGCCTCTGATGGTATTGTGAACGAGAACTTAGTGGAACGGTTCAGC 255157 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 |||| |||||| | ||| || | ||||| || || || || || ||||| ||||| Sbjct 255156 CAAGAAGTGCAGGTCACTGAAGCTAGGTGCTTTTATGGATTTCAAATTGCCATTGAGAAT 255097 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG-TCGAGCG 42601 | |||||||| ||||| || || | | || |||||| ||||| | || | Sbjct 255096 ATCCACTCTGAAATGTACAGCATGCTAATTGAAACTTACATCAGTGATCCGGATCAAAAA 255037 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || || ||||| ||||| || || | || || | || |||||||| || ||||| Sbjct 255036 GAA-TTTCTTTTCAATGCCATTGAAACATTACCTTGTGTTAAAAAGAAGGCTGAATGGGC 254978 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| || | || | || || ||||| | ||||| ||| | || Sbjct 254977 ATTGAACTGGATCAGCAGCAAGAATGCCAGTTTTGGTGAGAGAATTGTAGCTTTTGCTGC 254918 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 || |||||||| ||||| || ||| || || | || ||||||||||| || ||| Sbjct 254917 TGTTGAGGGCATTTTCTTTTCTGGCAGTTTTGCAGCAATTTTCTGGCTCAAAAAG-AGGG 254859 Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 ||| ||||| || | ||||| || || || | || ||||| || || || || Sbjct 254858 GTCTTATGCCTGGCTTAACCTTTTCAAATGAGTTAATTTCAAGGGATGAAGGTCTACACT 254799 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTC 42865 | || ||||| || | ||||||| Sbjct 254798 GTGATTTTGCTTGTTTAATGTTCTC 254774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303043612880