Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq308 138 2e-27 seq97 138 2e-27 seq44 109 9e-19 >seq308 Length=193707 Score = 138 bits (152), Expect = 2e-27 Identities = 398/605 (66%), Gaps = 12/605 (2%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || ||||||||||| | || | || || | ||||||||||||||||||| Sbjct 5178 TTGTCGACAGTGAACTGAATCGGTTTGGCTGCGGGTTTAGTTCTCAGATAGTACATGCCT 5237 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 || || || || || |||| || || | |||||| ||||| || | | |||| Sbjct 5238 GTTTTCAGTCCTTTGCGCCAACCATAGAAGTGCATCGAAGATAGGACTCCATAGGTGGGT 5297 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 ||| ||||| ||||||| |||||| ||||| |||||| ||||| || ||||| || || Sbjct 5298 GAGGCGATGTGGATGTTCAAAGACTGACTTTGATCGATG-AAGGCACCACGATCCGCCGC 5356 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 ||| || | | ||||| ||||||||||| || || ||| | | | | | | Sbjct 5357 CATGTTCAAGACTACTTTCTGTGAAATCTCCCAAACAGTTTTGTAAATTGCCTTAATATT 5416 Query 204079 TTGAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCT-CATC 204133 | || | |||| | || | ||| || || || || || | ||| || Sbjct 5417 ATCGGG----TATTCCAGGAATGTTTTGGATTGATCCACAGTTTGCGATGA-TCTGGTTC 5471 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | || ||||| ||||| |||| || | | || | || | Sbjct 5472 TTCATAACATCGTTCCACAACCCCAATTCAGTCAGATCTTTGAGTAAATGTTGATTCACT 5531 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | || || ||||| |||| || | || |||| | | ||| ||| | ||||| | Sbjct 5532 ACTTGGAATTCTCCAGACAAAACTCTTCTGGTGTAAATATTGGATGTGTAAGGTTCAACG 5591 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | ||| || ||||| ||||| |||||||| ||||| |||||||| || |||| | || Sbjct 5592 GACTCATTATTGCCTAAAATTTGAGCGGTACTGGCTGTGGGCATCGGTGCCAACAACAAC 5651 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCA 204373 || || |||||||| | |||| || | ||||| | || |||||| || | Sbjct 5652 GAATTTCGCACACCATGTTTTGCGATTTTAGCCTTCAAGGCGGCCCAGTCCCACAGATCT 5711 Query 204374 CTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTG 204433 | ||| | ||| |||||| ||| | || || || |||| ||| || |||||||| | | Sbjct 5712 GTTGGTGTGACGTTCCACATATCGTATTGTAAAATACCTTTACTTACAGGGCTGCCTTCG 5771 Query 204434 TACGT 204438 ||||| Sbjct 5772 TACGT 5776 >seq97 Length=492714 Score = 138 bits (152), Expect = 2e-27 Identities = 398/605 (66%), Gaps = 12/605 (2%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || ||||||||||| | || | || || | ||||||||||||||||||| Sbjct 11212 TTGTCGACAGTGAACTGAATCGGTTTGGCTGCGGGTTTAGTTCTCAGATAGTACATGCCT 11153 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 || || || || || |||| || || | |||||| ||||| || | | |||| Sbjct 11152 GTTTTCAGTCCTTTGCGCCAACCATAGAAGTGCATCGAAGATAGGACTCCATAGGTGGGT 11093 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 ||| ||||| ||||||| |||||| ||||| |||||| ||||| || ||||| || || Sbjct 11092 GAGGCGATGTGGATGTTCAAAGACTGACTTTGATCGATG-AAGGCACCACGATCCGCCGC 11034 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 ||| || | | ||||| ||||||||||| || || ||| | | | | | | Sbjct 11033 CATGTTCAAGACTACTTTCTGTGAAATCTCCCAAACAGTTTTGTAAATTGCCTTAATATT 10974 Query 204079 TTGAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCT-CATC 204133 | || | |||| | || | ||| || || || || || | ||| || Sbjct 10973 ATCGGG----TATTCCAGGAATGTTTTGGATTGATCCACAGTTTGCGATGA-TCTGGTTC 10919 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | || ||||| ||||| |||| || | | || | || | Sbjct 10918 TTCATAACATCGTTCCACAACCCCAATTCAGTCAGATCTTTGAGTAAATGTTGATTCACT 10859 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | || || ||||| |||| || | || |||| | | ||| ||| | ||||| | Sbjct 10858 ACTTGGAATTCTCCAGACAAAACTCTTCTGGTGTAAATATTGGATGTGTAAGGTTCAACG 10799 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | ||| || ||||| ||||| |||||||| ||||| |||||||| || |||| | || Sbjct 10798 GACTCATTATTGCCTAAAATTTGAGCGGTACTGGCTGTGGGCATCGGTGCCAACAACAAC 10739 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCA 204373 || || |||||||| | |||| || | ||||| | || |||||| || | Sbjct 10738 GAATTTCGCACACCATGTTTTGCGATTTTAGCCTTCAAGGCGGCCCAGTCCCACAGATCT 10679 Query 204374 CTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTG 204433 | ||| | ||| |||||| ||| | || || || |||| ||| || |||||||| | | Sbjct 10678 GTTGGTGTGACGTTCCACATATCGTATTGTAAAATACCTTTACTTACAGGGCTGCCTTCG 10619 Query 204434 TACGT 204438 ||||| Sbjct 10618 TACGT 10614 >seq44 Length=686090 Score = 109 bits (120), Expect = 9e-19 Identities = 304/460 (66%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||| || ||||| || || || |||| || || ||||| || || | | | | | Sbjct 254786 CAAGCAAAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTTAAG 254845 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 || ||||| | || | | ||||||||| ||||| || |||||| || ||| || Sbjct 254846 CCAGGCATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAGAAA 254905 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 || ||||| || || ||||| || || | |||||||||||| ||| || || | Sbjct 254906 ATGCCCTCAACAGCAGCAAAAGCTACAATTCTCTCACCAAAACTGGCATTCTTGCTGCTG 254965 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT- 160161 |||| | |||||||||||||||||| | || || | || | ||| || Sbjct 254966 ATCCAGTTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAATGTTTCAATGGCATTG 255025 Query 160162 -AAACAA--TCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTA 160218 ||| || ||| | || || | ||| |||| ||| |||| ||| | ||| Sbjct 255026 AAAAGAAATTCT-TTTTGATC---CGGATCACTGATGTAAGTTTCAATTAGCATGCTGTA 255081 Query 160219 CATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAG 160278 |||||| | ||| | ||| || ||||| || ||||| || || | | | || ||| Sbjct 255082 CATTTCAGAGTGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAG-CTTCAG 255140 Query 160279 ATA-CTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGG 160337 | |||||| || || |||||| || | | || | || || | || || | || Sbjct 255141 TGACCTGCACTTCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAGG 255200 Query 160338 CCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTC 160377 | ||||||||||| | ||||| |||||||| || || || Sbjct 255201 CGGCAAAGAAAGCAAGGACGTGGGAGATGAAGTGCCTTTC 255240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795124755495280