Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq153 111 2e-19 seq66 89.7 6e-13 seq5 82.4 9e-11 >seq153 Length=365504 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| || | || |||||| ||||| ||||||||||| Sbjct 156776 CCACCTCTGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 156835 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||| || |||||||| |||| || |||||||| | || Sbjct 156836 AATGTACGTCCATCCTCCAACTGTTTACCGGCGAAGATCAGACGTTGCTGGTCTGGTGGA 156895 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| ||| || |||| || | | |||||| | || || Sbjct 156896 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCGACC 156955 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| ||||||||||| || || ||||||||| || Sbjct 156956 TCAAGAGTGATGGTCTTGCCAGTCAGCGTTTTCACGAAAATTTGCATTGTG 157006 >seq66 Length=580730 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| || | | |||| ||| | |||| || || || ||||||||||| | Sbjct 320027 TGCCTCCTCTCAATCTAAGTACCAAATGTAGTGTAGATTCTTTCTGAATATTGTAGTCAG 320086 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| | | || || || || || |||||||| || | || ||||| || | | Sbjct 320087 AAAGAGTTCTTCCATCCTCAAGTTGTTTACCGGCGAAGATGAGACGTTGCTGATCTGGGG 320146 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| |||||| ||| | | | | | ||||| | ||| | Sbjct 320147 GAATACCTTCCTTGTCCTGGATCTTAGCCTTTA-CATTTCAATGGTGTCTGAAGGTTCGA 320205 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||||||||| || || | ||||| ||||| || ||||| Sbjct 320206 CTTCCAGGGTGATGGTTTTCCCGGTTAAAGTTTTTACAAAAATCTGCAT 320254 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| || | | |||| ||| | |||| || || || ||||||||||| | Sbjct 320254 TGCCTCCTCTCAATCTAAGTACCAAATGTAGTGTAGATTCTTTCTGAATATTGTAGTCAG 320313 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| | | || || || || || |||||||| || | || ||||| || | | Sbjct 320314 A-AGAGTTCTTCCATCCTCAAGTTGTTTACCGGCGAAGATGAGACGTTGCTGATCTGGGG 320372 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | | | | ||||| | ||| | Sbjct 320373 GAATGCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCAGAAGGTTCGA 320432 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 320433 CTTCCAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACAAAAATCTGCAT 320481 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | ||||| | |||| |||||||| || ||||| ||||| || |||||| Sbjct 317518 CCTCCACGCAAACGAAGAACCAAGTGCAATGTGGATTCTTTTTGAATATTATAATCGGAT 317577 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || ||||| || ||||||||||| || | || |||||||| | || Sbjct 317578 AAGGTACGACCATCCTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCTGGGGGG 317637 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||| ||| | | | | ||||| | ||| || Sbjct 317638 ATACCTTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCGACT 317697 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| ||||| || || | ||||| || || || |||||| Sbjct 317698 TCCAGAGTGATTGTTTTCCCGGTTAAAGTTTTGACGAAAATCTGCATT 317745 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || || | | |||| ||| | |||| || || || ||||||||||| | Sbjct 320481 TGCCTCCCCTCAATCTGAGTACCAAATGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG 320540 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | | || || || || || || ||||| || | || || || || | | Sbjct 320541 AAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCGAAGATGAGACGTTGTTGATCTGGAG 320600 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | | | | || || | ||| | Sbjct 320601 GAATGCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTATCTGAAGGTTCAA 320660 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCA 46599 | || | |||||||||||||| |||| ||||| |||||||| ||||| |||| Sbjct 320661 CTTCAAGAGTGATGGTTTTGCCAGTCAATGTTTTCACAAAGATCTGCATGCTGCA 320715 >seq5 Length=1768869 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || || | |||| || | || |||||||||||||||||||| || Sbjct 910336 CCTCCTCTCAATCGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCTGAA 910395 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || || || ||||| || || |||| || || ||||| | || Sbjct 910396 AGGGTCCTGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAGACGTTGTTGGTCTGGGGGG 910455 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| ||| || |||| || | | ||||| | ||| || Sbjct 910456 ATACCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCAGAAGGTTCAACC 910515 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || ||||| || |||| ||||| |||||||| |||||| Sbjct 910516 TCCAAAGTAATTGTTTTACCAGTCAAAGTTTTTACAAAGATCTGCATT 910563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565216758434760