Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq308 87.8 2e-12 seq97 87.8 2e-12 seq570 86.0 7e-12 >seq308 Length=193707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 231/340 (68%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA-TAC 109558 ||||| |||||| ||||||||||| ||||||||| |||||||||| | || ||| Sbjct 5312 GTTCAAAGACTGACTTTGATCGATGAAGGCACCACGATCCGCCGCCATGTTCAAGACTAC 5371 Query 109559 ACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATT--CTTGATATCATCGGGAATGTC 109616 || || ||| ||||| ||||| |||| ||||| ||| |||| |||||| || || Sbjct 5372 -TTTCTGTGAAATCTCCCAAACAGTTTTGT--AAATTGCCTTAATATTATCGGGTAT-TC 5427 Query 109617 CACG-ATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCG 109672 || | |||||||| || || ||| ||| || | |||| | | |||||| | | Sbjct 5428 CAGGAATGTTTTGGATTGATCCA-CAG--TTTGCGATGATCTGGTTCTTCATAACATCGT 5484 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCAC 109732 ||| | || | | | ||||| | | | ||| | || || || ||||| | Sbjct 5485 TCCACAACCCCAATTCAGTCAGATCTTTGAGTAAATGTTGATTCACTACTTGGAATTCTC 5544 Query 109733 CAG-CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791 ||| ||| | | || | ||| || || | ||||| ||||| | ||||||| ||| Sbjct 5545 CAGACAAAACT-CTTCTGGTGTAAATATTGGATGTGTAAGGTTCAACGGACTCATTATTG 5603 Query 109792 CCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCA 109831 |||| ||||| || || ||||||||||| || |||| Sbjct 5604 CCTAAAATTTGAGCGGTACTGGCTGTGGGCATCGGTGCCA 5643 >seq97 Length=492714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 231/340 (68%), Gaps = 16/340 (5%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA-TAC 109558 ||||| |||||| ||||||||||| ||||||||| |||||||||| | || ||| Sbjct 11078 GTTCAAAGACTGACTTTGATCGATGAAGGCACCACGATCCGCCGCCATGTTCAAGACTAC 11019 Query 109559 ACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATT--CTTGATATCATCGGGAATGTC 109616 || || ||| ||||| ||||| |||| ||||| ||| |||| |||||| || || Sbjct 11018 -TTTCTGTGAAATCTCCCAAACAGTTTTGT--AAATTGCCTTAATATTATCGGGTAT-TC 10963 Query 109617 CACG-ATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCG 109672 || | |||||||| || || ||| ||| || | |||| | | |||||| | | Sbjct 10962 CAGGAATGTTTTGGATTGATCCA-CAG--TTTGCGATGATCTGGTTCTTCATAACATCGT 10906 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCAC 109732 ||| | || | | | ||||| | | | ||| | || || || ||||| | Sbjct 10905 TCCACAACCCCAATTCAGTCAGATCTTTGAGTAAATGTTGATTCACTACTTGGAATTCTC 10846 Query 109733 CAG-CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791 ||| ||| | | || | ||| || || | ||||| ||||| | ||||||| ||| Sbjct 10845 CAGACAAAACT-CTTCTGGTGTAAATATTGGATGTGTAAGGTTCAACGGACTCATTATTG 10787 Query 109792 CCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCA 109831 |||| ||||| || || ||||||||||| || |||| Sbjct 10786 CCTAAAATTTGAGCGGTACTGGCTGTGGGCATCGGTGCCA 10747 >seq570 Length=101851 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/88 (83%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC-GT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||| Sbjct 48032 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 47973 Query 136776 TGGG--AACAGCTTTTAGATATATTTTT 136801 |||| || | ||||| || ||||||| Sbjct 47972 TGGGCCAATATTTTTTAAATTTATTTTT 47945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588953449581400