Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq83 89.7 1e-12 seq13 87.8 4e-12 >seq83 Length=537067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAAC 167299 ||||| | ||||||||||||||||||| || |||||| || ||||| || | ||||| Sbjct 80986 CATTATAGCACCAGCATTATCGAATTCGTTACAATAATTCGGCGCTGAGAACAATGTAAC 81045 Query 167300 TAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 | | ||| ||| ||| |||||||| || ||||| || |||| ||| ||||| Sbjct 81046 CAGCTGACGTTTGGCAAAAAATTCATAGCCGTCTTCTACTACTTGATGAGCACG 81099 >seq13 Length=1338714 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 ||||| | ||||| | || || || ||| |||||||| ||| | ||| |||||||| Sbjct 883300 TTCAACCGTCAACCTACTCTTCACAAGATGAGTATGATGGGTCACAGAGTAAAAGTATTG 883359 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTAC---GCCTTATAATGCGGATTTT 305452 | | | |||||||| | || | || || |||| |||||| ||||| |||||| Sbjct 883360 CCGTGGTCCACATTTCGCATGAACTT--GTCCT-GTACTTCGCCTTACAATGCCGATTTT 883416 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||||||||||| | || ||||| ||| Sbjct 883417 GATGGAGATGAAATGAATCTCCACGTACCACAA 883449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186766223902543