Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5 107 1e-18 seq153 98.7 7e-16 seq66 95.1 9e-15 >seq5 Length=1768869 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||||||||| || || || || || || | || || ||| | | Sbjct 907826 AATGCAAATTTTTGTGAAAACCCTCACAGGAAAGACGATCACTTTGGAAGTGGAACCCTC 907767 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | || || ||| ||||| || ||||||||| |||| || Sbjct 907766 TGATACCATTGAAAAC--GTAAAAGCGAAAATCCAAGATAAAGAAGGTATTCCACCAGAC 907709 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| || |||||||| || ||||||||||| || | ||| | | || || ||| Sbjct 907708 CAACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTTCAGACTAC 907649 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| |||||||||||||| || || ||||| || Sbjct 907648 AATATACAAAAAGAATCCACGTTGCATTTGGTTTTACGCTTACGTGGAGG 907599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || || | ||||| ||| || || | || || ||| | | Sbjct 910791 AATGCAGATCTTTGTCAAGACATTAACTGGTAAAACCATCACTTTAGAAGTGGAACCCTC 910732 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || || |||||| || ||||||||| |||| || Sbjct 910731 AGATACAATTGAGAAT--GTAAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCAGAT 910674 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | || ||||| || |||||| | || |||| ||||| |||||| ||||| Sbjct 910673 CAACAACGTCTGATCTTTGCTGGCAAACAACTAGAAGACGGACGCACCTTGTCTGATTAT 910614 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||| || || |||||||||| Sbjct 910613 AACATCCAAAAGGAATCTACACTGCATTTGGT 910582 >seq153 Length=365504 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| |||||||| || ||||| || || || |||| ||||| | | Sbjct 157003 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCCTC 156944 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| | ||| |||||| ||||| ||||| || || |||| || Sbjct 156943 TGACACGATCGAGAAT--GTCAAAGCCAAAATCCAAGACAAGGAGGGCATTCCACCAGAC 156886 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | || || ||||| ||||| ||||| || | ||| | |||||||| ||| Sbjct 156885 CAGCAACGTCTGATCTTCGCCGGTAAACAGTTGGAGGATGGACGTACATTGTCCGACTAC 156826 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| || ||| ||| | || ||||| Sbjct 156825 AACATCCAGAAGGAGTCCACCCTTCACTTGGT 156794 >seq66 Length=580730 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| || |||||| | || |||||| || || | || |||||| | Sbjct 317745 AATGCAGATTTTCGTCAAAACTTTAACCGGGAAAACAATCACTCTGGAAGTCGAACCTTC 317686 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| || || || || ||||| |||||| | || || Sbjct 317685 AGACACCATTGAAAAT--GTAAAGGCTAAGATTCAAGACAAGGAAGGTATCCCCCCAGAC 317628 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | ||||| ||||| |||||| | || || | || | ||| |||||||| Sbjct 317627 CAGCAACGTCTTATTTTCGCCGGCAAACAACTCGAGGATGGTCGTACCTTATCCGATTAT 317568 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| ||||| |||||| | ||||||||||| || Sbjct 317567 AATATTCAAAAAGAATCCACATTGCACTTGGTTCTTCGTTTGCGTGGAGG 317518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355849115545401