Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethina_20tumida_20[refseq_20GCF_5F001937115.1_202017-01-05] 3,063 sequences; 234,344,249 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq44 358 6e-94 >seq44 Length=686090 Score = 358 bits (396), Expect = 6e-94 Identities = 619/892 (69%), Gaps = 12/892 (1%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || |||| |||||| ||||| ||| |||||| ||||| || ||||| || ||| Sbjct 254486 ACTCCAACTTTTTGATATTCTCCAACTTTCTTTTCAAAGAAGTTTGTTTTTCCATCTGTA 254545 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || || || ||| |||||||| ||||| | || ||| || |||||| | Sbjct 254546 GAGATTATTGTCATGAAATCAAAAGGATTTACAACATTATAAATCTTCTCACACCCCAAT 254605 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 || | |||| ||||| ||||| || ||||| || | ||| | || || || || Sbjct 254606 TCTGTCAATAATCTATCAGCCACAAACTCAATATATTGACACATTAATTTACAATTCATG 254665 Query 4428 CCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCT 4487 |||||||| ||||| |||| || | || | || |||||||| || |||| || || Sbjct 254666 CCAATTAAACTCACTGGTAAAGCATCAGTGAGGAATTCTTGTTCAATGATTACAGCATCG 254725 Query 4488 GTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA 4547 |||||| | | | | | || || || ||||| | ||| | ||| |||| |||| Sbjct 254726 CGAATTATACTTGTCACTCTTTCCTTTGAAGGTTTTTGTACAAGGTAGGAGAACATTAAA 254785 Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||||||||| || | |||||| || || ||| | || || ||||| ||||| Sbjct 254786 CAAGCAAAATCACAGTGTAGACCTTCATCCCTTGAAATTAACTCATTTGAAAAGGTTAAG 254845 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 254846 CCAGGCATAAGACCCCTCTTTTTGAGCCAGAAAATTGCTGCAAAACTGCCAGAAAAGAAA 254905 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT--CT- 4724 ||||| || || || ||||| ||||| | || || | | ||||| || | || Sbjct 254906 ATGCCCTCAACAGCAGCAAAAGCTACAATTCTCTCACCAA---AACTGGCATTCTTGCTG 254962 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | ||||| || |||||||| | ||| || || ||||| || || | ||| | || || Sbjct 254963 CTGATCCAGTTCAATGCCCATTCAGCCTTCTTTTTAACACAAGGTAATGTTTCAATGGCA 255022 Query 4785 TT--AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 || ||| || || ||||| | || || || ||||| || ||||| | ||| | Sbjct 255023 TTGAAAAGAAATT--CTTTTTGATCCGGATCACTGATGTAAGTTTCAATTAGCATGCTGT 255080 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 |||||||||| || ||||| || || ||||| |||||||| |||||||| |||||||| | Sbjct 255081 ACATTTCAGAGTGGATATTCTCAATGGCAATTTGAAATCCATAAAAGCACCTAGCTTCAG 255140 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | || || ||||| | | || | ||| |||||||| ||||| || ||||| ||| || Sbjct 255141 TGACCTGCACTTCTTGGCTGAACCGTTCCACTAAGTTCTCGTTCACAATACCATCAGAGG 255200 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT-TAAGTTTTTTC 5021 | ||||| || || | || || || || |||| | ||| | | || | || || | Sbjct 255201 CGGCAAAGAAAGCAAGGACGTGGGAGATGAAGTGCCTTTCAT-TGTCTGTTAGCTTGACC 255259 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 || || || ||| || | || || |||||||| |||||||| || ||||| ||| Sbjct 255260 CAATGATCCAGATCCTTGGACAAGTCCACTTCTTCTGTTGTCCAAAATGAGGCTTCTGCT 255319 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 | ||||| | | ||||||||| || || ||||| || | || ||||||| Sbjct 255320 TCCTTGTATTTGGCCCAAATATCTGGGTATTGAATGGGGAAAATAACAAATC 255371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427033658104979