Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq169 210 2e-49 seq296 120 2e-22 >seq169 Length=813669 Score = 210 bits (232), Expect = 2e-49 Identities = 405/589 (69%), Gaps = 9/589 (2%) Strand=Plus/Plus Query 101750 TTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACT 101809 || || | |||||| ||||| ||| | | | ||| || ||||| || ||||||||| Sbjct 304286 TTTGTTATATGAGCTATCATAACAGTCAGTAATGCATAACTGGCAATATTGAATGGCACT 304345 Query 101810 CCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACA 101869 || | ||||||||||||||||||||||||||| |||||||| | ||||| ||| Sbjct 304346 CCAAGACCCATATCAGCTGATCTTTGATACAGTAAGCAGGAAAGTTCTCCATTTGCAACA 304405 Query 101870 TAAAATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATT 101928 | || || | || || || ||||| || | ||||| ||| ||||| | || Sbjct 304406 AAGAACTG-CACAAGGCAGTGGCAAGGAGGTAGAGCCATTAAAGGTATGTCAATAGGGTT 304464 Query 101929 CCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCA-ATCAACT 101987 ||| |||||||| | ||||| | | |||| || |||| ||| || | || | | Sbjct 304465 CCAGGCACACATAATAATCCTACGA-CTGTTTGGATTGTCCTTAATGTCTTTTATTACAT 304523 Query 101988 GTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCT 102046 |||| |||||||| ||||| || | || || || || ||| ||||||| || Sbjct 304524 TATTTAGTTGGTCAATGCCTTCACCACTGTAGTCAGCATGCATT-CCTCTATATTCAGCC 304582 Query 102047 CCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAA 102106 || || || |||||||| |||||||| |||||||| | ||| ||||| || || || | | Sbjct 304583 CCAAAGTGTCTCCACTGGAATCCATAGACAGGTCCCAAATCGCCTTCTTCCCTTTCTTTA 304642 Query 102107 AAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCT 102166 ||||| | ||||| ||| || ||| | ||| | |||||||||||| || | Sbjct 304643 AAACCTAAACCATCTAGAAACTCTCGAGAACTATTTGGATCCCAAATGTGAACATCTTTC 304702 Query 102167 GCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACA 102226 ||| ||||||||| | || || | |||||||||| | ||||||||| || Sbjct 304703 TCTGCTAGCTCTTTTGAATTTGTGCTACCCTTAATAAACCACAGTAATTCTTCAACCACT 304762 Query 102227 CCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTCT---AAACTAAAC 102283 |||||||||||||| || || || || | | ||||| | |||||| | | | Sbjct 304763 CCTCTCCAAAATACCCTTTTTGTTGTAAGCAAAGGAAAAACGTTTTCTCTCAGGGAATAA 304822 Query 102284 CTAGACTGTGTTCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCAT 102332 | ||||| ||||||||| | || |||||| ||| || | ||||| Sbjct 304823 CGCATCTGTGCTCCAAAAATTCCCATTGTTCCCACCCCAGTACGGTCAT 304871 >seq296 Length=775295 Score = 120 bits (132), Expect = 2e-22 Identities = 391/596 (66%), Gaps = 16/596 (3%) Strand=Plus/Minus Query 101677 TTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTC 101736 ||| | ||| || ||||||| | | | |||||| || || || || || ||||| || Sbjct 25991 TTTCAAAGCTTCTATGTGATTTTGAAATATGTGACTGTCGCCAATCGTGTGTATAAATTC 25932 Query 101737 TCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAAT 101796 | || || | || |||||||| |||||| |||| |||| || || ||||| Sbjct 25931 GCTGGGTTTTAAACCGGTCACATGAGCTATCATGACCGTTAGGAGAGCGTAACTCGCAAT 25872 Query 101797 GTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT- 101855 ||| || || || || | |||||||| || |||||||| || | ||| ||| Sbjct 25871 GTTGAACGGTACCCCCAGTCCCATATCGGCCGATCTTTGGTATA----ACAACGAAGACA 25816 Query 101856 -TTC--CATCACAGACATAAAATTG-ACTTAATACATGACAAGGCGGCAACACCATTTTA 101911 ||| ||| | || ||||||| || | | |||||| || || | |||||| Sbjct 25815 ATTCGTCATTATTTACGAAAAATTGTACGAGACA-ATGACAGGGTGGAAGAGCCATTTGT 25757 Query 101912 GGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 || ||||| | |||||| | ||| | | ||||||||||| | || | |||| Sbjct 25756 GGTATGTCCACAGGATTCCACGAACATAAGATTATCCTTCTATCATTCGGATAATTTTTG 25697 Query 101972 ATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTC--TCCTTTATAATCGCGCCCAA 102029 || |||| ||||| || | ||||| || | |||||| || || | | || | | | Sbjct 25696 ATTGTATTAATCACTTGACTCAATTGATCGATTCCTTCATTCGCGTA-ATTGGCTCGC-A 25639 Query 102030 CACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTC 102089 ||| |||| || ||||| ||||| | ||||||||| ||||| | || || | |||| Sbjct 25638 TGCCTCTATACTCAGCTCCAAAATGACGCCACTGAAACCCATATATCGGACCCAAGTCTC 25579 Query 102090 CTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCC 102149 | || |||| ||| ||| || | | |||| ||| | || || | || |||||| Sbjct 25578 CCTCTTCTCGGTCCCCAAACCCCATTCTATCCAAATACTCCCTCGAACTGTTGACATCCC 25519 Query 102150 AAATGTGCACGCCAGCTGCT-GATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCAC 102208 | || | ||| ||| | || || |||||| | || |||| | || |||||| Sbjct 25518 ATATTTTTACG-TTTCTGGTAGAAAGTTCTTTGGCATTTGTGCTTCCTTTTATTAACCAC 25460 Query 102209 AACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 | || || || || || || | |||||| || | || |||||||| || || Sbjct 25459 AGCATCTCCTCGACTACGCCACGCCAAAAGACACGACGTGTCGTTAAAAGGGGGAA 25404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361233641836988