Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq169 210 2e-49
seq296 120 2e-22
>seq169
Length=813669
Score = 210 bits (232), Expect = 2e-49
Identities = 405/589 (69%), Gaps = 9/589 (2%)
Strand=Plus/Plus
Query 101750 TTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACT 101809
|| || | |||||| ||||| ||| | | | ||| || ||||| || |||||||||
Sbjct 304286 TTTGTTATATGAGCTATCATAACAGTCAGTAATGCATAACTGGCAATATTGAATGGCACT 304345
Query 101810 CCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACA 101869
|| | ||||||||||||||||||||||||||| |||||||| | ||||| |||
Sbjct 304346 CCAAGACCCATATCAGCTGATCTTTGATACAGTAAGCAGGAAAGTTCTCCATTTGCAACA 304405
Query 101870 TAAAATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATT 101928
| || || | || || || ||||| || | ||||| ||| ||||| | ||
Sbjct 304406 AAGAACTG-CACAAGGCAGTGGCAAGGAGGTAGAGCCATTAAAGGTATGTCAATAGGGTT 304464
Query 101929 CCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCA-ATCAACT 101987
||| |||||||| | ||||| | | |||| || |||| ||| || | || | |
Sbjct 304465 CCAGGCACACATAATAATCCTACGA-CTGTTTGGATTGTCCTTAATGTCTTTTATTACAT 304523
Query 101988 GTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCT 102046
|||| |||||||| ||||| || | || || || || ||| ||||||| ||
Sbjct 304524 TATTTAGTTGGTCAATGCCTTCACCACTGTAGTCAGCATGCATT-CCTCTATATTCAGCC 304582
Query 102047 CCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAA 102106
|| || || |||||||| |||||||| |||||||| | ||| ||||| || || || | |
Sbjct 304583 CCAAAGTGTCTCCACTGGAATCCATAGACAGGTCCCAAATCGCCTTCTTCCCTTTCTTTA 304642
Query 102107 AAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCT 102166
||||| | ||||| ||| || ||| | ||| | |||||||||||| || |
Sbjct 304643 AAACCTAAACCATCTAGAAACTCTCGAGAACTATTTGGATCCCAAATGTGAACATCTTTC 304702
Query 102167 GCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACA 102226
||| ||||||||| | || || | |||||||||| | ||||||||| ||
Sbjct 304703 TCTGCTAGCTCTTTTGAATTTGTGCTACCCTTAATAAACCACAGTAATTCTTCAACCACT 304762
Query 102227 CCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTCT---AAACTAAAC 102283
|||||||||||||| || || || || | | ||||| | |||||| | | |
Sbjct 304763 CCTCTCCAAAATACCCTTTTTGTTGTAAGCAAAGGAAAAACGTTTTCTCTCAGGGAATAA 304822
Query 102284 CTAGACTGTGTTCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCAT 102332
| ||||| ||||||||| | || |||||| ||| || | |||||
Sbjct 304823 CGCATCTGTGCTCCAAAAATTCCCATTGTTCCCACCCCAGTACGGTCAT 304871
>seq296
Length=775295
Score = 120 bits (132), Expect = 2e-22
Identities = 391/596 (66%), Gaps = 16/596 (3%)
Strand=Plus/Minus
Query 101677 TTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTC 101736
||| | ||| || ||||||| | | | |||||| || || || || || ||||| ||
Sbjct 25991 TTTCAAAGCTTCTATGTGATTTTGAAATATGTGACTGTCGCCAATCGTGTGTATAAATTC 25932
Query 101737 TCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAAT 101796
| || || | || |||||||| |||||| |||| |||| || || |||||
Sbjct 25931 GCTGGGTTTTAAACCGGTCACATGAGCTATCATGACCGTTAGGAGAGCGTAACTCGCAAT 25872
Query 101797 GTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT- 101855
||| || || || || | |||||||| || |||||||| || | ||| |||
Sbjct 25871 GTTGAACGGTACCCCCAGTCCCATATCGGCCGATCTTTGGTATA----ACAACGAAGACA 25816
Query 101856 -TTC--CATCACAGACATAAAATTG-ACTTAATACATGACAAGGCGGCAACACCATTTTA 101911
||| ||| | || ||||||| || | | |||||| || || | ||||||
Sbjct 25815 ATTCGTCATTATTTACGAAAAATTGTACGAGACA-ATGACAGGGTGGAAGAGCCATTTGT 25757
Query 101912 GGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971
|| ||||| | |||||| | ||| | | ||||||||||| | || | ||||
Sbjct 25756 GGTATGTCCACAGGATTCCACGAACATAAGATTATCCTTCTATCATTCGGATAATTTTTG 25697
Query 101972 ATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTC--TCCTTTATAATCGCGCCCAA 102029
|| |||| ||||| || | ||||| || | |||||| || || | | || | | |
Sbjct 25696 ATTGTATTAATCACTTGACTCAATTGATCGATTCCTTCATTCGCGTA-ATTGGCTCGC-A 25639
Query 102030 CACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTC 102089
||| |||| || ||||| ||||| | ||||||||| ||||| | || || | ||||
Sbjct 25638 TGCCTCTATACTCAGCTCCAAAATGACGCCACTGAAACCCATATATCGGACCCAAGTCTC 25579
Query 102090 CTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCC 102149
| || |||| ||| ||| || | | |||| ||| | || || | || ||||||
Sbjct 25578 CCTCTTCTCGGTCCCCAAACCCCATTCTATCCAAATACTCCCTCGAACTGTTGACATCCC 25519
Query 102150 AAATGTGCACGCCAGCTGCT-GATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCAC 102208
| || | ||| ||| | || || |||||| | || |||| | || ||||||
Sbjct 25518 ATATTTTTACG-TTTCTGGTAGAAAGTTCTTTGGCATTTGTGCTTCCTTTTATTAACCAC 25460
Query 102209 AACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264
| || || || || || || | |||||| || | || |||||||| || ||
Sbjct 25459 AGCATCTCCTCGACTACGCCACGCCAAAAGACACGACGTGTCGTTAAAAGGGGGAA 25404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361233641836988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |