Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12 188 7e-43 seq428 95.1 1e-14 seq218 87.8 2e-12 >seq12 Length=2314596 Score = 188 bits (208), Expect = 7e-43 Identities = 401/596 (67%), Gaps = 2/596 (0%) Strand=Plus/Plus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 ||||||| || || || || ||||| || ||||| ||| | |||||| | || || | Sbjct 281211 GGTTCGTAATATTTCCTATTCAATATCCAGACATTTGGGAAAAGTACAAGGAAGCTGAAG 281270 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT 116723 | || |||||||| || || || ||||| || |||||| | ||||||| | Sbjct 281271 CTTCCTTCTGGACAACAGAAGAAGTAGACCTTTCTAAGGACCTTGCCCACTGGGATAAGT 281330 Query 116724 TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACG 116783 || | | || | |||||||| || || || |||||||| || || || | Sbjct 281331 TGTCAAATGATGAAAGGCATTTCATTTCACATGTACTTGCCTTTTTTGCTGCATCTGATG 281390 Query 116784 GCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGC 116843 | || || || || || || || ||| | ||| ||| || || || || | ||||| | Sbjct 281391 GAATTGTAAATGAAAACCTTGTAGAGAGATTCAGTCAAGAAGTACAAGTAACTGAGGCTC 281450 Query 116844 GGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCC 116903 | ||||| || || || || || ||||| || || | || || ||||||||| || | Sbjct 281451 GTTGCTTTTATGGTTTCCAAATTGCCATTGAAAATATCCATTCAGAAATGTATAGTACTC 281510 Query 116904 TCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGA 116963 |||| ||||| || | | || ||||| | | || || || || || | Sbjct 281511 TCATTGACACTTATATATTTGACCCAGAAGAGAAAGAATTTCTTTTCAATGCTATTGAAA 281570 Query 116964 CGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC-GCCGGCAGAGAG 117022 | ||||| || || || ||||||| || ||||| || | |||||| || | ||| | Sbjct 281571 CCATGCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCATTGGATCAGCAGTAAGA-AT 281629 Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082 || | ||| || || | || || || || || || || || | |||||||| || Sbjct 281630 GCAACATTCCCAGAACGAGTTGTTGCATTTGCAGCTGTGGAAGGAATTTTCTTTTCAGGA 281689 Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142 ||||| || || || ||||||||||||||||| || || ||||| || ||||| || Sbjct 281690 AGTTTTGCTGCTATCTTTTGGCTCAAGAAACGGGGTCTTATGCCAGGACTGACATTTTCT 281749 Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 || ||||| || || | || || ||| ||||||| || ||||| ||||| |||| Sbjct 281750 AATGAGCTTATTTCTCGCGATGAAGGTTTGCATTGTGATTTTGCTTGTTTAATGTT 281805 >seq428 Length=160056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || | ||||| || |||||||| | || |||||| | || Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| |||||| | || ||||| || || || | ||||| Sbjct 129504 GATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAA 129563 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | || || ||||| |||| || | || || | || |||||| Sbjct 129564 CAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAAC 129623 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||| | || ||||| | || || | |||||||| || Sbjct 129624 ATCCAAAAGGAATCGACATTGCATTTGGTCTTAAGATTGAGGGGAGG 129670 >seq218 Length=661058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || ||||| |||||| | || || ||| | | Sbjct 356909 AATGCAGATTTTTGTTAAGACACTAACTGGTAAAACAATCACCCTTGAGGTAGAACCGTC 356850 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| ||||||| || |||||||| || || | |||| Sbjct 356849 TGACACAATAGAGAACG-TAAAGGCTAAAATTCAAGATAAAGAGGGTATTCCACCAGACC 356791 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| || | || | || ||||| ||||| || || | | || | || |||| Sbjct 356790 AACAAAGATTAATTTTTGCTGGCAAGCAGCTTGAAGATGGTAGGACATTGTCTGATTACA 356731 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||| || |||| || ||| |||| ||||| Sbjct 356730 ACATCCAGAAAGAATCCACCCTTCATTTAGTTTTGCG 356694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515193516322880