Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq12 188 7e-43
seq428 95.1 1e-14
seq218 87.8 2e-12
>seq12
Length=2314596
Score = 188 bits (208), Expect = 7e-43
Identities = 401/596 (67%), Gaps = 2/596 (0%)
Strand=Plus/Plus
Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663
||||||| || || || || ||||| || ||||| ||| | |||||| | || || |
Sbjct 281211 GGTTCGTAATATTTCCTATTCAATATCCAGACATTTGGGAAAAGTACAAGGAAGCTGAAG 281270
Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT 116723
| || |||||||| || || || ||||| || |||||| | ||||||| |
Sbjct 281271 CTTCCTTCTGGACAACAGAAGAAGTAGACCTTTCTAAGGACCTTGCCCACTGGGATAAGT 281330
Query 116724 TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACG 116783
|| | | || | |||||||| || || || |||||||| || || || |
Sbjct 281331 TGTCAAATGATGAAAGGCATTTCATTTCACATGTACTTGCCTTTTTTGCTGCATCTGATG 281390
Query 116784 GCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGC 116843
| || || || || || || || ||| | ||| ||| || || || || | ||||| |
Sbjct 281391 GAATTGTAAATGAAAACCTTGTAGAGAGATTCAGTCAAGAAGTACAAGTAACTGAGGCTC 281450
Query 116844 GGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCC 116903
| ||||| || || || || || ||||| || || | || || ||||||||| || |
Sbjct 281451 GTTGCTTTTATGGTTTCCAAATTGCCATTGAAAATATCCATTCAGAAATGTATAGTACTC 281510
Query 116904 TCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGA 116963
|||| ||||| || | | || ||||| | | || || || || || |
Sbjct 281511 TCATTGACACTTATATATTTGACCCAGAAGAGAAAGAATTTCTTTTCAATGCTATTGAAA 281570
Query 116964 CGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC-GCCGGCAGAGAG 117022
| ||||| || || || ||||||| || ||||| || | |||||| || | ||| |
Sbjct 281571 CCATGCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCATTGGATCAGCAGTAAGA-AT 281629
Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082
|| | ||| || || | || || || || || || || || | |||||||| ||
Sbjct 281630 GCAACATTCCCAGAACGAGTTGTTGCATTTGCAGCTGTGGAAGGAATTTTCTTTTCAGGA 281689
Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142
||||| || || || ||||||||||||||||| || || ||||| || ||||| ||
Sbjct 281690 AGTTTTGCTGCTATCTTTTGGCTCAAGAAACGGGGTCTTATGCCAGGACTGACATTTTCT 281749
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198
|| ||||| || || | || || ||| ||||||| || ||||| ||||| ||||
Sbjct 281750 AATGAGCTTATTTCTCGCGATGAAGGTTTGCATTGTGATTTTGCTTGTTTAATGTT 281805
>seq428
Length=160056
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||||||||| || || | ||||| || |||||||| | || |||||| | ||
Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | |||| |||||| | || ||||| || || || | |||||
Sbjct 129504 GATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAA 129563
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || || | || || ||||| |||| || | || || | || ||||||
Sbjct 129564 CAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAAC 129623
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||| ||||| | || ||||| | || || | |||||||| ||
Sbjct 129624 ATCCAAAAGGAATCGACATTGCATTTGGTCTTAAGATTGAGGGGAGG 129670
>seq218
Length=661058
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || || || || ||||| |||||| | || || ||| | |
Sbjct 356909 AATGCAGATTTTTGTTAAGACACTAACTGGTAAAACAATCACCCTTGAGGTAGAACCGTC 356850
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | |||| | |||| ||||||| || |||||||| || || | ||||
Sbjct 356849 TGACACAATAGAGAACG-TAAAGGCTAAAATTCAAGATAAAGAGGGTATTCCACCAGACC 356791
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
| ||| || | || | || ||||| ||||| || || | | || | || ||||
Sbjct 356790 AACAAAGATTAATTTTTGCTGGCAAGCAGCTTGAAGATGGTAGGACATTGTCTGATTACA 356731
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||| || |||| || ||| |||| |||||
Sbjct 356730 ACATCCAGAAAGAATCCACCCTTCATTTAGTTTTGCG 356694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515193516322880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |