Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq169 192 4e-44
seq296 140 2e-28
>seq169
Length=813669
Score = 192 bits (212), Expect = 4e-44
Identities = 357/519 (69%), Gaps = 4/519 (1%)
Strand=Plus/Plus
Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181
||| || |||||| ||| | || | ||| || ||||| || || ||||| || || ||
Sbjct 304294 ATGAGCTATCATAACAGTCAGTAATGCATAACTGGCAATATTGAATGGCACTCCAAGACC 304353
Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241
||||||||||||||||||||| | |||||||| | ||||| ||| | |||||
Sbjct 304354 CATATCAGCTGATCTTTGATACAGTAAGCAGGAAAGTTCTCCATTTGCAACAAAGAACTG 304413
Query 97242 ACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCAC 97300
| ||| || || || || || | |||||| || | || | ||||| ||||
Sbjct 304414 -CACAAGGCAGTGGCAAGGAGGTAGAGCCATTAAAGGTATGTCAATAGGGTTCCAGGCAC 304472
Query 97301 ACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTA-ATTATCTGCTTTAAT 97359
|||| | || || | | | ||| || |||| || || || |||| | |||| |
Sbjct 304473 ACATAATAATCCTACGA-CTGTTTGGATTGTCCTTAATGTCTTTTATTACATTATTTAGT 304531
Query 97360 TGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGC 97419
|| |||| |||||| |||| || | | | ||| |||||| || ||||| ||
Sbjct 304532 TGGTCAATGCCTTCACCACTGTAGTCAGCATGCATTCCTCTATATTCAGCCCCAAAGTGT 304591
Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGC 97479
||||| ||||||||||| |||||||| | || |||||||| || || ||||| |
Sbjct 304592 CTCCACTGGAATCCATAGACAGGTCCCAAATCGCCTTCTTCCCTTTCTTTAAAACCTAAA 304651
Query 97480 TTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGC 97539
||||| | | | ||| | ||||| |||||||||||| ||| | |||| |||
Sbjct 304652 CCATCTAGAAACTCTCGAGAACTATTTGGATCCCAAATGTGAACATCTTTCTCTGCTAGC 304711
Query 97540 TCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAA 97599
||||| | || || | |||||||||| |||||||| || || |||||||||
Sbjct 304712 TCTTTTGAATTTGTGCTACCCTTAATAAACCACAGTAATTCTTCAACCACTCCTCTCCAA 304771
Query 97600 AATACTCTCTTAGTTGTTAAGAGAGGAAAATCCTTTTCT 97638
||||| || || ||||| | | ||||||| | ||||||
Sbjct 304772 AATACCCTTTTTGTTGTAAGCAAAGGAAAAACGTTTTCT 304810
>seq296
Length=775295
Score = 140 bits (154), Expect = 2e-28
Identities = 327/488 (67%), Gaps = 4/488 (1%)
Strand=Plus/Minus
Query 97032 AAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTG 97091
|||||| ||| | | ||| || |||||||| | | |||||| || || | |||||
Sbjct 26000 AAGCTGGTCTTTCAAAGCTTCTATGTGATTTTGAAATATGTGACTGTCGCCAATCGTGTG 25941
Query 97092 AATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATA 97151
|||||||| | || |||| | || ||||| || ||||| |||| |||| ||
Sbjct 25940 TATAAATTCGCTGGGTTTTAAACCGGTCACATGAGCTATCATGACCGTTAGGAGAGCGTA 25881
Query 97152 GCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACA 97211
|| |||||||| || || ||||| ||||||||||| || |||||||| |||||| |
Sbjct 25880 ACTCGCAATGTTGAACGGTACCCCCAGTCCCATATCGGCCGATCTTTGGTATAACAACGA 25821
Query 97212 GGAAAGCTTTCCATCACACACATAAAACTG-ACTCAATACATGACAGGGGGGCAACGCCA 97270
|| | | ||| | || |||| || || | | ||||||||| || | ||||
Sbjct 25820 AGACAATTCGTCATTATTTACGAAAAATTGTACGAGACA-ATGACAGGGTGGAAGAGCCA 25762
Query 97271 TTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTG 97330
||| ||| | || | |||||| | ||| | | || |||||||| | || |
Sbjct 25761 TTTGTGGTATGTCCACAGGATTCCACGAACATAAGATTATCCTTCTATCATTCGGATAAT 25702
Query 97331 TGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCT 97390
| | || |||||||| | || | |||||||| | ||||| | |||||| |||
Sbjct 25701 TTTTGATTGTATTAATCACTTGACTCAATTGATCGATTCCTTCATTCGCGTAATTG-GCT 25643
Query 97391 -TAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGG 97449
| ||| ||| || ||||||||||| | ||| || || ||||| | || || | |
Sbjct 25642 CGCATGCCTCTATACTCAGCTCCAAAATGACGCCACTGAAACCCATATATCGGACCCAAG 25583
Query 97450 TCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCA 97509
||||| ||||||| || | || || | |||| ||||| ||| || | || ||
Sbjct 25582 TCTCCCTCTTCTCGGTCCCCAAACCCCATTCTATCCAAATACTCCCTCGAACTGTTGACA 25523
Query 97510 TCCCAAAT 97517
||||| ||
Sbjct 25522 TCCCATAT 25515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346767144997160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |