Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq218 129 9e-25 seq137 122 1e-22 seq428 111 2e-19 seq135 105 1e-17 seq209 98.7 1e-15 seq316 95.1 2e-14 >seq218 Length=661058 Score = 129 bits (142), Expect = 9e-25 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||||||| | ||| |||||||| | ||| ||||| || || ||||| | Sbjct 352152 TTCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAG 352211 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||||| | ||| || |||||||| || ||||||||||| | |||||| || |||| Sbjct 352212 ACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAG 352271 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||| || || || ||||| ||||| Sbjct 352272 GAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTA 352331 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| |||||||| ||||| || ||||| ||||||| || |||||||| Sbjct 352332 CTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 129 bits (142), Expect = 9e-25 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||| || |||||||||||||| |||||||| || ||||||||||||||| Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || || ||||| || |||||||| | | ||| ||||| || || Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||||| || |||||| Sbjct 356118 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACT 356177 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| ||||||||||| | ||| |||||||| Sbjct 356178 TCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 114 bits (126), Expect = 2e-20 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| | ||||||||| | ||| |||||||| ||||||||||| | Sbjct 356452 TTCCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGG 356511 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | ||||||||| ||||| || || || |||||||| || | Sbjct 356512 AGAGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTG 356571 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||| ||||| |||||||| ||| | Sbjct 356572 GAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAA 356631 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| ||||| |||||||| || | || || | ||| |||||||| Sbjct 356632 CTTCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/214 (68%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | ||| |||||||| | ||| ||||| || || ||||| || Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || ||||| || |||||||||||||| | ||| || || |||||| Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| || || || ||||| ||||||| Sbjct 357355 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACT 357414 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAA 146264 || ||||||||||||||||| |||| ||| |||| Sbjct 357415 TCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAA 357448 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | || || ||||| | || |||||||| || || ||||| || Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || || | ||| || | || || ||||||||||| |||||||| || || || ||| Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || ||||||||||| || || || |||||| Sbjct 356802 ATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACC 356861 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || |||||||||||||| |||| ||| |||| || || |||||| Sbjct 356862 TCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCATT 356909 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | || || ||||| | ||| |||||||| ||||| || || ||| Sbjct 356226 CCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAA 356285 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| ||||| || || ||||||||||| | | ||| || || |||||| Sbjct 356286 AGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 356345 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 356346 ATACCTTCCTTGTCTTG 356362 >seq137 Length=480032 Score = 122 bits (134), Expect = 1e-22 Identities = 173/238 (73%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 10455 GCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGAC 10514 ||||| |||||| |||| |||| | | ||| || | ||||| || || |||||| Sbjct 193030 GCTCCACGATCTGGACTAGCCGTAAAGCATTCTATAGACGTAGGAGCAGGTGTTATTGAC 193089 Query 10515 GAAGATTATAGAGGA--AATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTA 10572 ||||| || ||||| ||| || || ||||||||||| |||| ||| |||| ||| Sbjct 193090 GAAGACTACAGAGGTGTAATTAAGG--TACTATTATTTAATTATTCCAATAAAGAATTTG 193147 Query 10573 TAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTA-AA 10631 ||||| | | ||| ||||||||| |||| ||||| ||||||||||| | |||||| | || Sbjct 193148 TAATAGAGATAGGTGATAGAATAGCTCAGTTAATTTGTGAAAAAATATCATATCCAACAA 193207 Query 10632 ATGTTAAAAG-TCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGGTTTTGGATCT 10688 |||| || | ||| || ||| | ||| | | || ||| ||| ||||||||| Sbjct 193208 CTGTTGAATGTTCGTTA--TTAGATAATACATATAAGTCAAATTGTGGATTTGGATCT 193263 >seq428 Length=160056 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || | |||||| |||||||| || || ||||| || || || ||||| || Sbjct 129670 CCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGAC 129611 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || |||||||||||||||||||| | | ||| || || || ||| Sbjct 129610 AAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGA 129551 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| ||||| || ||| || Sbjct 129550 ATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACC 129491 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || ||||| ||||| || || | |||||||||||| Sbjct 129490 TCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq135 Length=992699 Score = 105 bits (116), Expect = 1e-17 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 10455 GCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGAC 10514 ||||| ||||| | |||| ||| | | ||| || | ||||| | || |||||| Sbjct 566867 GCTCCATGATCTCAACTAGCCGCCAATCATTCTATAGACGTAGGAGCAGATGTTATTGAC 566808 Query 10515 GAAGATTATAGAGGA--AATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTA 10572 ||||| || ||||| ||| || || ||||||||||| |||||||| |||| ||| Sbjct 566807 GAAGACTACAGAGGTGTAATTAAGG--TACTATTATTTAATTATTCTAATAAAGAATTTG 566750 Query 10573 TAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAA 10632 || || | | ||| ||||||||| |||| |||| ||||||||||| | |||||| | || Sbjct 566749 TACTAGAGATAGGTGATAGAATAGCTCAGTTAAATTGTGAAAAAATATCATATCCAACAA 566690 Query 10633 T 10633 | Sbjct 566689 T 566689 >seq209 Length=720108 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 10455 GCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGAC 10514 ||||| |||||| |||| | || | | || || || ||||| || || ||| || Sbjct 33535 GCTCCACGATCTGGACTAGCCGTCGATCATTCTAAAGACATAGGAGCAGGTGTTATTAAC 33594 Query 10515 GAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATA 10574 ||||| || |||||| | ||| |||| || ||| ||||||| |||| ||| || Sbjct 33595 GAAGACTACAGAGGAGTAATTAACGTACTATTGTTGAATTATTCTAACAAAGAATTTGTA 33654 Query 10575 ATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAAT 10633 ||| | | ||| |||||||| |||| ||||| ||||||||||| | |||||| | ||| Sbjct 33655 ATAGAGATAGGTAATAGAATAGCTCAGTTAATTTGTGAAAAAATATCATATCCAACAAT 33713 >seq316 Length=279878 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 10491 GATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTT 10550 || || ||||| || || ||| ||||||| || ||||| || ||| ||| || Sbjct 150929 GACATAGGAGCAGGTGTTATTAACGAAGACTACAGAGGTGTAGTTAACGTACCATTGTTG 150988 Query 10551 AATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGT 10610 ||| ||||||| |||| ||| ||||| | | ||| ||||||| |||| ||||| ||| Sbjct 150989 AATTATTCTAACAAAGAATTTGTAATAGAGATAGGTAATAGAATGGCTCAGTTAATTTGT 151048 Query 10611 GAAAAAATTTTATATCCTA-AAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATC 10669 |||||||| | |||||| | || |||| || || || |||| | ||||| || || Sbjct 151049 GAAAAAATATCATATCCAACAATTGTTCAATGTTCAT-CTTTAGATAATACAAATAGGTC 151107 Query 10670 TGATTTTGGTTTTGGATCT 10688 ||| ||| |||| |||| Sbjct 151108 AAATTGTGGATTTGTATCT 151126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743489335208960