Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12 407 1e-108 >seq12 Length=2314596 Score = 407 bits (450), Expect = 1e-108 Identities = 633/896 (71%), Gaps = 18/896 (2%) Strand=Plus/Minus Query 15923 TTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTT 15982 |||| ||| | ||| || ||||||||||||| ||| ||||||||||||||||||| Sbjct 282108 TTATCTGAAGTGACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTC 282049 Query 15983 TTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATT-- 16040 || || || ||||| || | |||||| ||||| ||||| || |||| || | | Sbjct 282048 TTGCCATCAGTGGAAATTTTGTTCATAAAGTCAAACGGATTCTT--AACATTATAAATCT 281991 Query 16041 TATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTA 16100 |||| || ||||| || | || | | || || |||||||| |||||||| ||| | Sbjct 281990 TATCACAACCCAACTCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCA 281931 Query 16101 AATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTA 16160 | || ||||| || |||| | ||||| | || || |||||||| | | ||| | Sbjct 281930 GTTTGCAATTCATACCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAA 281871 Query 16161 TATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGT 16220 | ||||| || || ||||||||| ||||| | || ||| || ||||| || Sbjct 281870 TTTTAACTGCATCGCGAATTATATCTGTTACT-CGCTCTTTT---GATGGTTTTTGAACA 281815 Query 16221 GTTTAA----ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 | ||| |||||| ||||||||||||||||||||| ||||| || | | || | | Sbjct 281814 ATATAAGAAAACATTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGC 281755 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || |||||||| || |||||||| || || ||||| || | |||||| ||||| ||| Sbjct 281754 TCATTAGAAAATGTCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCA 281695 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || || |||||||| || ||||| || || ||||||||||| | ||| || | | Sbjct 281694 AAACTTCCTGAAAAGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAAT 281635 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 ||| ||| ||||| ||||| | |||||||| || || | |||||||| | Sbjct 281634 GTTGCATTCTTACTGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGC 281575 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTA--TCTAAAATATAAGTAT 16514 ||| | || || ||||| || || || || ||||| | || || || |||||||| | Sbjct 281574 ATGGTTTCAATAGCATTGAA--AAGAAATTCTTTCTCTTCTGGGTCAAATATATAAGTGT 281517 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574 | || || |||||||||||||||||| ||||| || || || || || |||||||||| Sbjct 281516 CAATGAGAGTACTATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAA 281457 Query 16575 AGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTA 16633 |||| | ||| || | || ||||||||| || | || || ||| | | |||||| || Sbjct 281456 AGCAACGAGCCTCAGTTACTTGTACTTCTTGACT-GAATCTCTCTACAAGGTTTTCATTT 281398 Query 16634 ACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA 16693 || |||||||| || |||||||| ||||||| ||| ||| |||| |||| | | Sbjct 281397 ACAATTCCATCAGATGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCA 281338 Query 16694 TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAA 16753 | ||| | || ||||| | || || || || | || || |||||| ||||| Sbjct 281337 TTTGACAACTTATCCCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAG 281278 Query 16754 AAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 || ||||| |||| | || ||| ||| ||| |||||| || ||||||||| Sbjct 281277 AAGGAAGCTTCAGCTTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAA 281222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462488943776800