Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq169 214 1e-50
seq296 165 7e-36
>seq169
Length=813669
Score = 214 bits (236), Expect = 1e-50
Identities = 362/522 (69%), Gaps = 2/522 (0%)
Strand=Plus/Minus
Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103
||||| || | || || ||| |||||||||||| ||| || |||||||| ||| | |||
Sbjct 304800 TTTCCTTTGCTTACAACAAAAAGGGTATTTTGGAGAGGAGTGGTTGAAGAATTACTGTGG 304741
Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163
|||||||| || |||||||| | ||||| | ||| |||| ||| | ||||||
Sbjct 304740 TTTATTAAGGGTAGCACAAATTCAAAAGAGCTAGCAGAGAAAGATGTTCACATTTGGGAT 304681
Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGAT 20223
|| || | ||| | ||| || | | || ||| | | | |||| || |||
Sbjct 304680 CCAAATAGTTCTCGAGAGTTTCTAGATGGTTTAGGTTTTAAAGAAAGGGAAGAAGGCGAT 304621
Query 20224 TTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAAC 20283
||||| ||||| |||||||| || |||||||| ||||| ||||||||| | ||| |
Sbjct 304620 TTGGGACCTGTCTATGGATTCCAGTGGAGACACTTTGGGGCTGAATATAGAGGAATGCAT 304561
Query 20284 ACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACG 20343
| | || ||| |||| | || ||| || | ||||| || || |||||
Sbjct 304560 GCTGACTACAGTGGTGAAGGCATTGACCAACTAAATAATGTAATAAAAGACATTAAGGAC 304501
Query 20344 AACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATG 20403
|| |||||| | || |||||| | || ||||||||| ||| || | |||||||||
Sbjct 304500 AATCCAAACAGTCGTAGGATTATTATGTGTGCCTGGAACCCTATTGACATACCTTTAATG 304441
Query 20404 GCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTG 20462
||| | ||||| || || ||| || || || | ||||| ||| ||| | || ||
Sbjct 304440 GCTCTACCTCCTTGCCAC-TGCCTTGTGCAGTTCTTTGTTGCAAATGGAGAACTTTCCTG 304382
Query 20463 TCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTA 20522
| |||||||| |||| ||||||||||| || || || || ||||||||||| |||||
Sbjct 304381 CTTACTGTATCAAAGATCAGCTGATATGGGTCTTGGAGTGCCATTCAATATTGCCAGTTA 304322
Query 20523 TGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564
||| | || || |||||| || ||| | ||| | || ||
Sbjct 304321 TGCATTACTGACTGTTATGATAGCTCATATAACAAAGTTGAA 304280
>seq296
Length=775295
Score = 165 bits (182), Expect = 7e-36
Identities = 294/427 (69%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 20207 ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTG 20266
|||| ||||||| || |||||||| | ||||| ||||| ||| | |||||||||||||
Sbjct 25567 ACCGAGAAGAGGGAGACTTGGGTCCGATATATGGGTTTCAGTGGCGTCATTTTGGAGCTG 25626
Query 20267 AATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA 20326
| ||| | |||| | ||||| ||||| | |||||||| | || |
Sbjct 25627 AGTATAGAGGCATGCGAGCCAATTACGCGAATGAAGGAATCGATCAATTGAGTCAAGTGA 25686
Query 20327 TTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTA 20386
||||| ||| |||| | || || || ||||| || || ||||| | ||||| ||
Sbjct 25687 TTAATACAATCAAAAATTATCCGAATGATAGAAGGATAATCTTATGTTCGTGGAATCCTG 25746
Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTA 20446
|| | || ||||||| | || || |||||| || ||||||| ||| ||
Sbjct 25747 TGGACATACCACAAATGGCTCTTCCACCCTGTCATTGTCTCGTACAATTTTTCGTAAATA 25806
Query 20447 ATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTT 20506
|| | |||||||| | | || ||| |||| || |||||||||||||| || || |
Sbjct 25807 ATGACGAATTGTCTTCGTTGTTATACCAAAGATCGGCCGATATGGGACTGGGGGTACCGT 25866
Query 20507 TCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAA 20566
|||| ||||| ||||| || || || ||| ||||| || ||||| || | |||||||
Sbjct 25867 TCAACATTGCGAGTTACGCTCTCCTAACGGTCATGATAGCTCATGTGACCGGTTTAAAAC 25926
Query 20567 CGGGTGACTTAGTCCACACCATAGGAGAC--GCGCATATTTACCTTAATCATATAGAACC 20624
| | || || | ||||| || || ||| | ||||||| | ||||| |||||| |
Sbjct 25927 CCAGCGAATTTATACACACGATTGGCGACAGTCACATATTT--CAAAATCACATAGAAGC 25984
Query 20625 TTTAAAA 20631
||| |||
Sbjct 25985 TTTGAAA 25991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399164598160660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |