Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq169 214 1e-50 seq296 165 7e-36 >seq169 Length=813669 Score = 214 bits (236), Expect = 1e-50 Identities = 362/522 (69%), Gaps = 2/522 (0%) Strand=Plus/Minus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| || | || || ||| |||||||||||| ||| || |||||||| ||| | ||| Sbjct 304800 TTTCCTTTGCTTACAACAAAAAGGGTATTTTGGAGAGGAGTGGTTGAAGAATTACTGTGG 304741 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 |||||||| || |||||||| | ||||| | ||| |||| ||| | |||||| Sbjct 304740 TTTATTAAGGGTAGCACAAATTCAAAAGAGCTAGCAGAGAAAGATGTTCACATTTGGGAT 304681 Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGAT 20223 || || | ||| | ||| || | | || ||| | | | |||| || ||| Sbjct 304680 CCAAATAGTTCTCGAGAGTTTCTAGATGGTTTAGGTTTTAAAGAAAGGGAAGAAGGCGAT 304621 Query 20224 TTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAAC 20283 ||||| ||||| |||||||| || |||||||| ||||| ||||||||| | ||| | Sbjct 304620 TTGGGACCTGTCTATGGATTCCAGTGGAGACACTTTGGGGCTGAATATAGAGGAATGCAT 304561 Query 20284 ACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACG 20343 | | || ||| |||| | || ||| || | ||||| || || ||||| Sbjct 304560 GCTGACTACAGTGGTGAAGGCATTGACCAACTAAATAATGTAATAAAAGACATTAAGGAC 304501 Query 20344 AACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATG 20403 || |||||| | || |||||| | || ||||||||| ||| || | ||||||||| Sbjct 304500 AATCCAAACAGTCGTAGGATTATTATGTGTGCCTGGAACCCTATTGACATACCTTTAATG 304441 Query 20404 GCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTG 20462 ||| | ||||| || || ||| || || || | ||||| ||| ||| | || || Sbjct 304440 GCTCTACCTCCTTGCCAC-TGCCTTGTGCAGTTCTTTGTTGCAAATGGAGAACTTTCCTG 304382 Query 20463 TCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTA 20522 | |||||||| |||| ||||||||||| || || || || ||||||||||| ||||| Sbjct 304381 CTTACTGTATCAAAGATCAGCTGATATGGGTCTTGGAGTGCCATTCAATATTGCCAGTTA 304322 Query 20523 TGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 ||| | || || |||||| || ||| | ||| | || || Sbjct 304321 TGCATTACTGACTGTTATGATAGCTCATATAACAAAGTTGAA 304280 >seq296 Length=775295 Score = 165 bits (182), Expect = 7e-36 Identities = 294/427 (69%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 20207 ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTG 20266 |||| ||||||| || |||||||| | ||||| ||||| ||| | ||||||||||||| Sbjct 25567 ACCGAGAAGAGGGAGACTTGGGTCCGATATATGGGTTTCAGTGGCGTCATTTTGGAGCTG 25626 Query 20267 AATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA 20326 | ||| | |||| | ||||| ||||| | |||||||| | || | Sbjct 25627 AGTATAGAGGCATGCGAGCCAATTACGCGAATGAAGGAATCGATCAATTGAGTCAAGTGA 25686 Query 20327 TTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTA 20386 ||||| ||| |||| | || || || ||||| || || ||||| | ||||| || Sbjct 25687 TTAATACAATCAAAAATTATCCGAATGATAGAAGGATAATCTTATGTTCGTGGAATCCTG 25746 Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTA 20446 || | || ||||||| | || || |||||| || ||||||| ||| || Sbjct 25747 TGGACATACCACAAATGGCTCTTCCACCCTGTCATTGTCTCGTACAATTTTTCGTAAATA 25806 Query 20447 ATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTT 20506 || | |||||||| | | || ||| |||| || |||||||||||||| || || | Sbjct 25807 ATGACGAATTGTCTTCGTTGTTATACCAAAGATCGGCCGATATGGGACTGGGGGTACCGT 25866 Query 20507 TCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAA 20566 |||| ||||| ||||| || || || ||| ||||| || ||||| || | ||||||| Sbjct 25867 TCAACATTGCGAGTTACGCTCTCCTAACGGTCATGATAGCTCATGTGACCGGTTTAAAAC 25926 Query 20567 CGGGTGACTTAGTCCACACCATAGGAGAC--GCGCATATTTACCTTAATCATATAGAACC 20624 | | || || | ||||| || || ||| | ||||||| | ||||| |||||| | Sbjct 25927 CCAGCGAATTTATACACACGATTGGCGACAGTCACATATTT--CAAAATCACATAGAAGC 25984 Query 20625 TTTAAAA 20631 ||| ||| Sbjct 25985 TTTGAAA 25991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399164598160660