Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq310 524 1e-143 seq12 315 9e-81 seq104 82.4 1e-10 >seq310 Length=366558 Score = 524 bits (580), Expect = 1e-143 Identities = 1234/1851 (67%), Gaps = 23/1851 (1%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || | || ||| ||||| || ||||| | || ||||||| |||||| Sbjct 100539 GCAGGTTTTGTTCTTAAATAATACATACCAGTTTTCAAGCCCTTCTTCCATCCATAAAAA 100598 Query 62127 TGCATACTCGTTAGT--TTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGAC 62184 || || || | | ||| ||| | || | | | ||||| ||||| | ||| || | Sbjct 100599 TGAATGGACGACATTACTTG--ATAGTTTGGCTTTTCAATATGAATATTTAAAGACTGGC 100656 Query 62185 TTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTT 62244 | || || || |||||||| | ||||| ||||| |||| || || |||| ||||| Sbjct 100657 TCTGGTCAATAAAGGCTCCACGATCTGCCGCCATGTTTAAAATTACTTTCTGTGAAATTT 100716 Query 62245 CCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGG 62301 |||| | ||||||||| | || ||||| || |||| || |||| ||||| | Sbjct 100717 CCCACACAGTTTTATATATCTTTTTCATATCATCGGGAATTCCTGGAATATTTTGAATTG 100776 Query 62302 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62361 | |||| || | | || | || || ||| | |||| ||| | | | ||| || | Sbjct 100777 AGCCACAATTGGCAAGAACCTGGTTTTTCATCACGTCATCCCACAGTCCTAACTCAGTCA 100836 Query 62362 AAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 || ||||||| | ||| |||| || || ||||||||||| || || | | || | Sbjct 100837 AATCTCTAAGCAAATGATGGTTGACAACGAAAAATTCTCCAGATAAAACGCGTCTTGTAT 100896 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 | | ||| || || ||||| || || |||||||| ||||||||||| || ||||| | Sbjct 100897 ATAGATTCGAAGTGTATGGTTCTACAGATTCATTATTACCCAAAATTTGGGCTGTTGAAG 100956 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62541 | || ||||| || || | | ||| |||||||| |||||| | ||||| ||| Sbjct 100957 CGGTAGGCATTGGGGCAAGAAGTAATGAATTTCTAATACCGTACTTAGCAATTTTCGCTT 101016 Query 62542 TTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAA 62601 | | | |||||| ||| | || | || | ||| |||| || Sbjct 101017 TCAAAGCACCCCAATCCCACAAGTCTGTGGGAGTTTTATTCCACATATCATACTGTAAAA 101076 Query 62602 TACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGT 62660 | || || || | | || | ||| |||| || ||| || || || ||||| || | | Sbjct 101077 TCCCCTTGCTTACAGGACTA-CCTTCATAAGTGGAATAAGGACCATCTTTCTCTGCGATT 101135 Query 62661 TTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCT 62720 | ||| || || || | |||||||||||| | ||||| || || | | ||| || | Sbjct 101136 TCACAGCTTGCTTCAAGTGCACCGTAATACAAAGTTTCGAAAATTTGTTGATTAAGTTTC 101195 Query 62721 TGTGCTTCCGGGCTATCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTG 62779 ||||| ||||| ||| | | || ||| | |||||| || || ||||| ||||| Sbjct 101196 GCAGCTTCAGGGCTGTCATAAGC-TATACGAAGTAAAATAAAAGCATCGGCTAAACCTTG 101254 Query 62780 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62839 ||||| || || || ||||| || ||| ||| ||| ||| || ||||| | ||||| Sbjct 101255 TACACCGATTCCAATCGGTCTGTGCCTCACATTTGAGGTTTTGGCCTCTGGTACGGGATA 101314 Query 62840 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 62899 |||||||| || |||||||| || || ||| | || |||||| | || || | Sbjct 101315 ATAATTAACGTCGATAATTTTGTTTAGGTTTTTCGTAACAACTTTGGTGATTTCTTTTAA 101374 Query 62900 TTTGAGAAAATCAAA---TCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATGC 62953 || |||||| | | | ||| |||||||||| |||| ||||| ||||| Sbjct 101375 CTTCTTAAAATCGTAGGATTTTCTATCGGGCGTTACAAACATATTCACTGCAAGCGATGC 101434 Query 62954 CAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 63013 || |||||| || || || || | || | ||||| | || || ||||| | ||| Sbjct 101435 CAAATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAACAATTTCTGTGCATAAATT 101494 Query 63014 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63073 || | | || |||||||| ||||||||||| || ||| |||| || ||||| ||||| Sbjct 101495 GCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTCTGTTGCATGCATCTTTATA 101554 Query 63074 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63133 || ||||| ||||| |||||||| | ||||| | || || || | ||| | | Sbjct 101555 TAGCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTATAGCATGCCACAATTTCTG 101614 Query 63134 AGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAA 63193 ||| || | ||| ||||| | | |||| ||| || |||||| |||| || Sbjct 101615 AGCAGGTACTTGAGAAATGTATTTACCTTCTGCTTCATACTTTTCATACAACTGTTCAAA 101674 Query 63194 CTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTC 63253 || ||||||||| || || | || ||||||| || |||||||||| ||||| | Sbjct 101675 CTTTTCTCCCCAATTATCGTAAAGTCCGGGACATTGATGAGGACACATCAGTGACCAGTG 101734 Query 63254 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63313 || | | | |||| ||||||||| | ||| || ||||| || || ||| | ||| Sbjct 101735 CCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGTATCCATAGGGCATAAAACAAATC 101794 Query 63314 TCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63373 ||||| ||| || || ||||||||||| ||||| | || | || | | || || Sbjct 101795 TCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTCAAATTTAAAAATTCAAATATGTC 101854 Query 63374 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63433 | |||||| ||||| | || || || | | | ||||| | ||||| ||||| ||||| Sbjct 101855 TGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCAGGTCTCTTGTTACCTCCTTGATC 101914 Query 63434 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63493 || ||||| || |||||| |||| | | ||| |||| | |||||| || | || Sbjct 101915 TACATATCTGGCTAAATTATTAAAAACACGAAGCATAGGAACTAAACCGTTCGAAGTGCC 101974 Query 63494 ATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 63553 ||||| || | || | | || | ||||| ||||| | || || | || Sbjct 101975 GTTGGTGCCTGCTATGAAACTACCTTTAGCACGTATATTGTGCACGCTTATGCCCAAACC 102034 Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGT--TTTAACGTGTCATAGATGCCTTCTATG 63611 |||||| |||||| || | || | | || | ||| | | | | |||||||| ||| Sbjct 102035 ACCTGCCGATTTAGAAATGAGAGCAC-TTGTAGTCAAACAT-TTACAAATGCCTTCAATG 102092 Query 63612 CTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGC 63670 |||||||| || || || || ||||| || | || | | || || || || Sbjct 102093 CTATCATCAGGCATTGCTACCAAG-AAACACGATGAAAGCTGAGGTCTTGTGGTCCCAGC 102151 Query 63671 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 63730 || | |||||| || || || || || || || | || ||||||||| || Sbjct 102152 TGAGAACAGAGTAGGACTTGCATGTGTGAAAAATCGATCTGACATTAAATTGTACGTTTC 102211 Query 63731 AATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63790 || || | |||||||| | ||||| || || || || ||||| | |||||| || Sbjct 102212 TATTGCGGCATCTATATCTTTATAGTGAATGCCCACAGCAACTCGCATAAGCATGTGTTG 102271 Query 63791 AGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63850 ||||||||| || ||||| ||| | |||||| | || || ||| ||||||||||| Sbjct 102272 AGGTCTTTCGACGATTTTTCCGTTGACTTTCAAGAGATACGAACGTTCTAAAGTTTTAAA 102331 Query 63851 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 ||||||||| ||||| ||||| || || || || | ||||| ||||| || Sbjct 102332 ACCAAAATAATTGTAGGAAAAATCGCGATCATAGACGATAACGGAATTCAG 102382 >seq12 Length=2314596 Score = 315 bits (348), Expect = 9e-81 Identities = 613/900 (68%), Gaps = 9/900 (1%) Strand=Plus/Minus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 ||||| || ||||| |||||||| || ||||| || ||||| || || || || Sbjct 282096 ACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTG 282037 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || || | ||| || ||||||||||| ||||||| ||||| || | | | ||||| Sbjct 282036 GAAATTTTGTTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAAC 281977 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | | | || || || ||||| ||||| ||||| || |||||||| Sbjct 281976 TCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATA 281917 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || || | || || | ||| |||| | |||||| |||||||| || |||| Sbjct 281916 CCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCG 281857 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGT--AATAA-ATGTTTAAACATC 33578 || ||| | | || |||| | | ||| | | || || || |||||| Sbjct 281856 CGAATTATATCTGTTACTCGCTCTT---TTGATGGTTTTTGAACAATATAAGAAAACATT 281800 Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 ||||| || ||||| || |||| ||| || || | | ||| | || |||||||| || Sbjct 281799 AAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTC 281740 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 ||||| ||||| || || || || || |||||||| || | ||| || ||| |||||| Sbjct 281739 AGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAG 281680 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA-TG 33757 || |||||||| || || ||||| |||| || || ||| | || | | | || Sbjct 281679 AAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACTG 281620 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 ||||| | |||||||||| |||||||| || ||||||||||| ||||| || ||| Sbjct 281619 CTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCA 281560 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || || ||| | | ||| || | || | |||||| || || | | ||||||| Sbjct 281559 TTGAAAAGAAATTCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATAC 281500 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 ||||| ||||| || ||||||||||| || || || || || || || | |||||| || Sbjct 281499 ATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGTT 281440 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | || |||||| || |||| ||| | | |||||||| || ||||||||| || Sbjct 281439 ACTTGTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCA 281380 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 |||||||| || | ||||||| || |||| |||| || || | |||| ||| Sbjct 281379 GCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCAG 281320 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | | || ||||| | || |||||||| |||||| || || || || || | Sbjct 281319 TGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCC 281260 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||| | | ||| ||||| ||||||| || || || || || || || |||||||| Sbjct 281259 TTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTCTTGGATTT 281200 >seq104 Length=1066031 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 28088 TCCGTAAAGTAATTTCCTGTCCAATTTGATGTACCTATATACGCCGTTTTATCGGTTACC 28147 || |||||||| | | | | ||||||||| || |||| ||| ||||| |||||||||||| Sbjct 978 TCTGTAAAGTAGTCTGCCGACCAATTTGAAGTGCCTACATAAGCCGTATTATCGGTTACC 1037 Query 28148 ATATATTTTGCATGGTTTACCCTAGAATACGGAAT 28182 |||||||| || || || |||| |||||| || Sbjct 1038 ATATATTTATTGTGATTCACTCTAGCATACGGTAT 1072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629786203592640