Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq310 443 2e-119 seq12 360 2e-94 >seq310 Length=366558 Score = 443 bits (490), Expect = 2e-119 Identities = 1233/1867 (66%), Gaps = 37/1867 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| |||| || | || || | || | ||||||||| | ||||||||| |||||| Sbjct 100512 TCAACAGTGACTTGTTGCGGTTTAGCAGCAGGTTTTGTTCTTAAATAATACATACCAGTT 100571 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | ||| ||||||| |||||||| || | || | | || | || || Sbjct 100572 TTCAAGCCCTTCTTCCATCCATAAAAATGAATGGACGACATTACTTGATAGTTTGGCTTT 100631 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || | | || || || || || ||||| || || | || || ||||| Sbjct 100632 TCAATATGAATATTTAAAGACTGGCTCTGGTCAATAAAGGCTCCACGATCTGCCGCCATG 100691 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | |||||| ||| || || || ||||| || ||||||||||| | ||| |||| ||| Sbjct 100692 TTTAAAATTACTTTCTGTGAAATTTCCCACACAGTTTTATATATCTTTTTCATATCATCG 100751 Query 37030 GGTAAATCT---AAATGTTGAATAGAACCATTAT--GTAACACAATTGTATTCTTTATGT 37084 || | || | || |||||| || ||| || | || | | || || | || Sbjct 100752 GGAATTCCTGGAATATTTTGAATTGAGCCACAATTGGCAAGAACCTGGTTTT--TCATCA 100809 Query 37085 CATTATTCCACATATTTCTA-CTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 | | || ||||| | ||| || | | | ||||| | | || | || ||||| Sbjct 100810 CGTCATCCCACAG--TCCTAACTCAGTCAAATCTCTAAGCAAATGATGGTTGACAACGAA 100867 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| ||||||||||| || | ||||||||||| ||| ||| |||||||| | || || Sbjct 100868 AAATTCTCCAGATAAAACGCGTCTTGTATATAGATTCGAAGTGTATGGTTCTACAGATTC 100927 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 |||||||| || ||||| | ||| || || ||||||||||| || | || | ||| Sbjct 100928 ATTATTACCCAAAATTTGGGCTGTTGAAGCGGTAGGCATTGGGGCAAGAAGTAATGAATT 100987 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||| | || | || |||| || ||| | || ||||||||| || ||||| || Sbjct 100988 TCTAATACCGTACTTAGCAATTTTCGCTTTCAAAGCACCCCAATCCCACAAGTCTGTGGG 101047 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | || |||||||||||| |||| ||| || || || | ||| | | | ||| || Sbjct 101048 AGTTTTATTCCACATATCATACTGTAAAATCCCCTTGCTTACAGGACTACCTTCATAAGT 101107 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 |||||| || | | | || | ||| || || | ||| ||||| | ||||| | Sbjct 101108 GGAATAAGGACCATCTTTCTCTGCGATTTCACAGCTTGCTTCAAGTGCACCGTAATACAA 101167 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC-ATAGCCCA 37501 ||||||||||||||| ||| | | | ||||| ||| || | || ||| | | Sbjct 101168 AGTTTCGAAAATTTGTTGATTAAGTTTCGCAGCTTCAGGGCTGTCATAAGCTATA-CGAA 101226 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| ||||| |||| || ||||| || |||||||| || || ||||| || || || Sbjct 101227 GTAAAATAAAAGCATCGGCTAAACCTTGTACACCGATTCCAATCGGTCTGTGCCTCACAT 101286 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | || | | ||| || ||||||||||| | || || ||||| ||||| |||| Sbjct 101287 TTGAGGTTTTGGCCTCTGGTACGGGATAATAATTAACGTCGATAATTTTGTTTAGGTTTT 101346 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTAT------ 37675 | | | ||| || ||| | | ||||| | || || || | | || | Sbjct 101347 TCGTAACAACTTTGGTGATTTCTTTTAACTTCT-TAAAAT-CGTAGGATTTTCTATCGGG 101404 Query 37676 --TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 | ||||| || ||| | || ||| | | |||||| || |||||||| || | Sbjct 101405 CGTTACAAACATATTCACTGCAAGCGATGCCAAATTACAGACCGCAACTTCGTCAGGGGA 101464 Query 37734 ACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTG 37793 | || ||| | ||| ||||| || | ||| || |||||||||||| || || ||| Sbjct 101465 AGTATATTCAACAATTTCTGTGCATAAATTGCTGCTTCTAATTGTTCCTAAGTTTTGTTG 101524 Query 37794 ATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTG 37853 |||| |||| | || || | |||||||||||| || | || || || ||| | ||| Sbjct 101525 ATTGCTTTTTCTGTTGCATGCATCTTTATATAGCATGAAAGGAGTCCCAGTTTCGACTTG 101584 Query 37854 AGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAAC--GATCGCTTTAAttttttt 37910 || | || |||| | ||| || |||| || || || | || || || Sbjct 101585 AGAAACAATTATAGCATGCCA-CAATTTCTGAGCAGGTACTTGAGAAATGTATTTACCTT 101643 Query 37911 CTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTC-CCCCATACATCGCATAATC 37969 | || ||| || | | ||| || |||| ||| ||| ||||| |||| | | || Sbjct 101644 C--TGCTTCATACTTTTCATACAA-CTGTTCAAACTTTTCTCCCCAATTATCGTAAAGTC 101700 Query 37970 CTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAA 38029 | ||||||| |||||||| || ||||| | ||| || ||| || | || ||||| Sbjct 101701 CGGGACATTGATGAGGACACATCAGTGACCAGTGCCCATTTTGTTCAACTCTTTTCATAA 101760 Query 38030 ATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTA 38089 | ||||| |||| ||||| ||| ||| |||||| | | ||| ||||| || ||| Sbjct 101761 ACAAATCTGGTATCCATAGGGCATAAAACAAATCTCTTGCTCTCATCTCTTCTTTTCCTG 101820 Query 38090 CATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCG 38149 ||| ||| | || ||| ||| || ||||| || || ||||||||||| | ||| || | Sbjct 101821 TATTTTTTTTCAAATTTAAAAATTCAAATATGTCTGCATGCCATGGTTCAAGATAGATAG 101880 Query 38150 ACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATA 38209 | || || ||||| || | |||||| |||| | |||||| || |||||| | | Sbjct 101881 CAAAAGCACCAGGTCTCTTGTTACCTCCTTGATCTACATATCTGGCTAAATTATTAAAAA 101940 Query 38210 TTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCT 38269 | | |||||| |||| ||| || || ||||||| | || | ||| || |||| | Sbjct 101941 CACGAAGCATAGGAACTAAACCGTTCGAAGTGCCGTTGGTGCCTGCTATGAAACTACCTT 102000 Query 38270 TAGCTCGTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328 |||| |||||||| | || || || | |||||||| ||| || || | ||| Sbjct 102001 TAGCACGTATATT-GTGCACGCTTATGCCCAAACCACCTGCCGATTTAGAAATGAGAGCA 102059 Query 38329 CATTGT--TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAA 38386 | |||| | ||| | | | | || ||||| || || ||||| |||| || | | Sbjct 102060 C-TTGTAGTCAAACAT-TTACAAATGCCTTCAATGCTATCATCAGGCATTGCTACCAAGA 102117 Query 38387 AACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTA 38446 |||| || | ||||| || || || || || | |||||| ||||||| Sbjct 102118 AACACGATGAAAGCTGAGGTCTTGTGGTCCCAGCTGAGAACAGAGTAGGACTTGCATGTG 102177 Query 38447 TGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506 |||| || || |||| |||| || ||||||||| | |||||||||| || Sbjct 102178 TGAAAAATCGATCTGACATTAAATTGTACGTTTCTATTGCGGCATCTATATCTTTATAGT 102237 Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCT 38566 |||| || | || || | ||| ||||| ||||| |||||||| | ||||| || Sbjct 102238 GAATGCCCACAGCAACTCGCATAAGCATGTGTTGAGGTCTTTCGACGATTTTTCCGTTGA 102297 Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTC 38626 ||| | |||||||| |||||| ||||| | ||||||||| | || ||| |||| | Sbjct 102298 CTTTCAAGAGATACGAACGTTCTAAAGTTTTAAAACCAAAATAATTGTAGGAAAAATCGC 102357 Query 38627 TATCGTA 38633 ||| || Sbjct 102358 GATCATA 102364 >seq12 Length=2314596 Score = 360 bits (398), Expect = 2e-94 Identities = 618/890 (69%), Gaps = 9/890 (1%) Strand=Plus/Minus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGT 11389 || || |||||||||||||||| ||| ||| || ||||| ||||| || || ||| Sbjct 282096 ACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATC-AGT 282038 Query 11390 G-ATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 | | || | | ||||||| ||| ||||| | ||||| | | || |||||||| || Sbjct 282037 GGAAATTTTGTTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAA 281978 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 |||| ||| | | || || || ||||| |||||||||||||| | |||||||| Sbjct 281977 CTCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCAT 281918 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 ||| || || || || | |||| | || ||||| |||| ||| || ||||| ||||| Sbjct 281917 ACCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATC 281858 Query 11569 AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628 ||||| |||| || || |||||| || | | || ||||||||| Sbjct 281857 GCGAATTATATCTGTTACTCGCTCTTTTGATGGTTTTTGAACAATATAAGAAAACATTAA 281798 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| |||||||||||||| |||||||| || | | || || |||||||||||||| | Sbjct 281797 ACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCAG 281738 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 ||| ||||| | || ||||| || | |||||| ||||||||||| || |||||||| Sbjct 281737 TCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGAA 281678 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT--CCAT-ATACCTTGTTGCTAGA 11805 ||||| ||||||||||||||||| || |||| |||| || | | || || || Sbjct 281677 AATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACTGCT 281618 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| | ||||||||||| ||||| || || || ||| ||||| ||||| || Sbjct 281617 GATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCATT 281558 Query 11866 --AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 ||| |||| | ||| ||| || || ||| || || || | ||||||| Sbjct 281557 GAAAAGAAATTC--TTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATAC 281500 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 ||||||||||| |||||||| || || ||||| || ||||| || || || ||||| | Sbjct 281499 ATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGTT 281440 Query 11984 CACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 ||||| || | ||||| || | | || ||||||||||| |||||| | Sbjct 281439 ACTTGTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCA 281380 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAA 12103 |||||||| || |||| |||| || || | |||| || || | || |||||||| Sbjct 281379 GCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCAG 281320 Query 12104 TCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 | | | || || || | ||||||||||| ||||| || || | | || Sbjct 281319 TGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCC 281260 Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || ||| ||| ||| || || |||| | |||||| || || |||||||| Sbjct 281259 TTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCT 281210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468501444038720