Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq310 138 1e-27 seq218 104 2e-17 seq44 96.9 3e-15 seq25 93.3 4e-14 seq428 89.7 5e-13 >seq310 Length=366558 Score = 138 bits (152), Expect = 1e-27 Identities = 596/933 (64%), Gaps = 21/933 (2%) Strand=Plus/Plus Query 153269 ATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAAACGTGCTATA 153328 |||||||| ||| || || || ||||| | ||| | ||||| || | ||| ||| Sbjct 101054 ATTCCACATATCATACTGTAAAATCCCCTTGCTTACAGGACTACCTTCATAAGTGGAATA 101113 Query 153329 CGGCTCA-CTGTCAGACGCCAGTTTCAAA-CTGGCATCGAGCGCGGCATGATACACAGTT 153386 || || || || || | ||||| | || || || || || | | ||||| |||| Sbjct 101114 AGGACCATCTTTCTCT-GCGA-TTTCACAGCTTGCTTCAAGTGCACCGTAATACAAAGTT 101171 Query 153387 TCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATG 153446 ||| |||| |||| || ||| | || || ||| | || | ||| || | | Sbjct 101172 TCGAAAATTTGTTGATTAAGTTTCGCAGCTTCAGGGCTGTCATAAGCTATACGAAGTAAA 101231 Query 153447 ACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAt 153506 | ||| |||||||| |||||||| | || || || || || | || | || ||| || Sbjct 101232 ATAAAAGCATCGGCTAAACCTTGTACACCGATTCCAATCGGTCTGTGCCTCACATTTGAG 101291 Query 153507 ttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACG 153566 |||| || || || ||||| |||| |||||||||||| |||| | || Sbjct 101292 GTTTTGGCCTCTGGTACGGGATAATAATTAACGTCGATAATTTTGTTTAGGTTTTTCGTA 101351 Query 153567 ACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACG---TTCCATTAA---TGATA 153620 ||| ||| | | ||| | |||||| | | ||| || | | | Sbjct 101352 ACAACTTTGGTGATTTCTTTTAACTTCTTAAAATCGTAGGATTTTCTATCGGGCGTTACA 101411 Query 153621 TATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATAT 153680 | | || || |||| ||| ||||| || || || ||| |||||| |||| |||| Sbjct 101412 AACATATTCACTGCAAGCGATGCCAAATTACAGACCGCAACTTCGTCAGGGGAAGTATAT 101471 Query 153681 TGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTT 153740 | || ||||| | || |||||||||| | | || || | || |||||||||| Sbjct 101472 TCAACAATTTCTGTGCATAAATTGCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTT 101531 Query 153741 TTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCT 153800 || | ||| || || || || ||||||||| | || || || |||||| ||||| | Sbjct 101532 TTTCTGTTGCATGCATCTTTATATAGCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACA 101591 Query 153801 ATAATAGTACGCATCAATGTGACCGCGGGCATTTGATCGCGAAA---CTGGCCCTTGT-C 153856 || |||| | || |||| | || || | |||| |||| | |||| | | Sbjct 101592 ATTATAGCATGCCACAATTTCTGAGCAGGTACTTGA----GAAATGTATTTACCTTCTGC 101647 Query 153857 TTCGTAGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACA 153916 ||| || | || ||| | | |||||||| || || | ||| || ||| ||||||| Sbjct 101648 TTCATACTTTTCATACAACTGTTCAAACTTTTCTCCCCAATTATCGTAAAGTCCGGGACA 101707 Query 153917 TTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATC 153976 || | ||||||||||||||||| | ||||||| || ||| | |||||| | ||| Sbjct 101708 TTGATGAGGACACATCAGTGACCAGTGCCCATTTTGTTCAACTCTTTTCATAAACAAATC 101767 Query 153977 GGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCG 154036 || | ||||||||| | | || || | ||| || | ||||| | || | ||| Sbjct 101768 TGGTATCCATAGGGCATAAAACAAATCTCTTGCTCTCATCTCTTCTTTTCCTGTATTTTT 101827 Query 154037 ACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGC 154096 || | ||| | || | |||||| |||||| ||||| | || | || ||| Sbjct 101828 TTTCAAATTTAAAAATTCAAATATGTCTGCATGCCATGGTTCAAGATAGATAGCAAAAGC 101887 Query 154097 GCCTTTACGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAG 154153 || | |||| || || |||| ||| | | | | ||| || ||||| ||||| Sbjct 101888 ACCAGGTCTCTTGTTACCTCCTTGATCTACATATCTGGCTAAATTATTAAAAACACGAAG 101947 Query 154154 CATGGGTAGCAGACCGCTGGCGGTACCGTTTGT 154186 ||| || | | |||| | | || ||||| || Sbjct 101948 CATAGGAACTAAACCGTTCGAAGTGCCGTTGGT 101980 >seq218 Length=661058 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| ||||| || || | ||| |||||| |||||||| ||||| | Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||||| ||| | |||| ||||||||| || ||||| Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | |||||| | || || || Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || |||||||| || || |||||||| Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | |||||||||||| || | || || ||||||||||| || || || Sbjct 356226 CCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAA 356285 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||| || |||||| | || |||||||| || || ||||| Sbjct 356286 AGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 356345 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | |||| | | ||| | ||| || | ||||| || Sbjct 356346 ATACCTTCCTTGTC-TTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAAC 356404 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || ||||| || || ||||| Sbjct 356405 TTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||||||||| ||||||||| | || | ||||| || ||||| || Sbjct 356484 GTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACCATCTTCCAGTTGTTTTCCT 356543 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| | | |||||||| || || |||||||||||||| ||| |||||| ||| Sbjct 356544 GCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTTGTC-TTGAATTTTTGCTTT 356602 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||| || | || || || || | || | ||| || || || | || Sbjct 356603 AACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGATCGTTTTACCAGTGAGGGT 356662 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || ||||| ||||||||| || Sbjct 356663 CTTCACGAAAATTTGCATACCT 356684 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | |||||||||||| |||| || || ||||| || ||||| ||||| | Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| ||||| || |||||| | || | | ||| || || || || Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || ||||| || ||| |||| | |||| | || | |||||| | || || || Sbjct 356802 ATACCCTCTTTATC-TTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTAC 356860 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || || || || | || || || || || ||||| Sbjct 356861 CTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| ||||| || || | ||| |||||| |||||||| ||||| | Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | || ||||||||| | |||| |||||| || || ||||| Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354 Query 139658 ATGCCTTCTTTGTC 139671 || ||||||||||| Sbjct 357355 ATACCTTCTTTGTC 357368 >seq44 Length=1668621 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 58287 GCCTCAATGTTGCCCAAATCGCCGACGTGTCGCACCGCAGCGTTAGGCGCGCCATGAT-- 58344 || || | ||| || | |||||| ||||||| ||| | || | ||| || ||||||| Sbjct 466054 GCTTCTACGTTTCCAAGATCGCCAACGTGTCTCACGTCTGCATCAGGAGCTCCATGATCT 465995 Query 58345 -TGCTACCCGTAGGATTGAAATGTTCGCCGGCCGAAGTGCATCCGTTACTCATATCGCCA 58403 || || || |||||||||| | ||||| ||| | || ||||| | | || ||| Sbjct 465994 TTGTTATGCG---GATTGAAATGAGCACCGGCTGAAATACAGCCGTTGGTGTTGTCACCA 465938 Query 58404 AATTCGTGCACGTGAAAGCCGTGCAGTCCTTTCGGCAA 58441 ||||||||||| ||||| ||||| |||||||||| ||| Sbjct 465937 AATTCGTGCACATGAAATCCGTGGAGTCCTTTCGTCAA 465900 >seq25 Length=1883024 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| || || ||||| | || || ||||| ||||||||||| || Sbjct 1512025 CCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAA 1512084 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | || |||||||| | || | | || ||||| ||||| Sbjct 1512085 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGA 1512144 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | |||| | ||| | |||||| | ||| || || Sbjct 1512145 ATACCTTCCTTGTC-TTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAAC 1512203 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || || ||||| | ||||| || || |||||||| Sbjct 1512204 CTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCAT 1512251 >seq428 Length=160056 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| ||||| ||||| || || | ||||| | ||||| ||| Sbjct 129640 GTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCCAATTGTTTTCCA 129581 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || |||||||| || || || || || |||||||| || ||||||| || Sbjct 129580 GCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGGATTTTTGCCTTC 129521 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||| |||| || || ||||| | || | ||||| || || || || Sbjct 129520 ACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTCTTACCCGTTAAAGTC 129461 Query 139748 TTTACGAATATTTGCAT 139764 || |||||||||||||| Sbjct 129460 TTCACGAATATTTGCAT 129444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496039271209600