Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq12 347 1e-90
>seq12
Length=2314596
Score = 347 bits (384), Expect = 1e-90
Identities = 643/930 (69%), Gaps = 20/930 (2%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
||| | || || || ||||||||||||| ||| | ||||||||||| || || || ||
Sbjct 282102 GAAGTGACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCA 282043
Query 13626 TCCAGTG-ATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACT-TTATCAC 13683
|| |||| | || || | |||||| ||||| ||||| || |||| | | | |||||||
Sbjct 282042 TC-AGTGGAAATTTTGTTCATAAAGTCAAACGGATTC-TTAACATTATAAATCTTATCAC 281985
Query 13684 AACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC 13743
|||| | |||| || | | ||||| | ||| || ||||| |||||||| | | |
Sbjct 281984 AACCCAACTCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGC 281925
Query 13744 AATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACA 13803
|||||||||| ||||| ||||||| | || ||||||||||| | ||| || |
Sbjct 281924 AATTCATACCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAA 281865
Query 13804 CAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAA 13863
| || || || ||| ||| | ||| || || || | ||| | | |||
Sbjct 281864 CTGCATCGCGAATTATATCTGTTACTCGCTCTTTTGATGG----TTTTTGAACAATATAA 281809
Query 13864 AAA----TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13919
|| ||||||| |||||||||||||| | || ||||| | | |||||| || ||
Sbjct 281808 GAAAACATTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTA 281749
Query 13920 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC 13979
|||||||| | ||||||||| | || ||||| || | |||||| || ||||||||
Sbjct 281748 GAAAATGTCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTT 281689
Query 13980 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14039
|| |||||||| ||||| || || || ||||| || | | ||||||| || | |||
Sbjct 281688 CCTGAAAAGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCA 281629
Query 14040 TTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 14099
|| || | ||||| | |||||| |||| || || |||| | || ||| |||
Sbjct 281628 TTCTTACTGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTT 281569
Query 14100 TCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTAT--GTATCAATAA 14157
||||||||||| || | | |||| ||||||| | | |||| ||| || ||||| |
Sbjct 281568 TCAATAGCATTGAAAAGAAATTCTTTCTCTT--CTGGGTCAAATATATAAGTGTCAATGA 281511
Query 14158 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC 14217
| ||||||||||| || || || ||||| || || || || |||||||||||||| |
Sbjct 281510 GAGTACTATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAAC 281451
Query 14218 TAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14276
||| || | ||||||||| || | ||||| || | | |||||||| || ||
Sbjct 281450 GAGCCTCAGTTACTTGTACTTCTTGACT-GAATCTCTCTACAAGGTTTTCATTTACAATT 281392
Query 14277 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14336
|||||| || |||||||| || | || | | ||| || | || |||||
Sbjct 281391 CCATCAGATGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGAC 281332
Query 14337 AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396
| || | ||| | || | ||||||||||| |||||||| || |||||| || |
Sbjct 281331 AACTTATCCCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAA 281272
Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14456
|| |||||| || ||| || |||| || ||| |||| |||||||| | ||| ||
Sbjct 281271 GCTTCAGCTTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAAC 281212
Query 14457 C-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485
| || ||| ||||| |||| | ||||||
Sbjct 281211 CTTCTTGGAT-TTTCTCTAAGCAATGGTTC 281183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479704085559200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |