Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq12 347 1e-90 >seq12 Length=2314596 Score = 347 bits (384), Expect = 1e-90 Identities = 643/930 (69%), Gaps = 20/930 (2%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 ||| | || || || ||||||||||||| ||| | ||||||||||| || || || || Sbjct 282102 GAAGTGACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCA 282043 Query 13626 TCCAGTG-ATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACT-TTATCAC 13683 || |||| | || || | |||||| ||||| ||||| || |||| | | | ||||||| Sbjct 282042 TC-AGTGGAAATTTTGTTCATAAAGTCAAACGGATTC-TTAACATTATAAATCTTATCAC 281985 Query 13684 AACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC 13743 |||| | |||| || | | ||||| | ||| || ||||| |||||||| | | | Sbjct 281984 AACCCAACTCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGC 281925 Query 13744 AATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACA 13803 |||||||||| ||||| ||||||| | || ||||||||||| | ||| || | Sbjct 281924 AATTCATACCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAA 281865 Query 13804 CAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAA 13863 | || || || ||| ||| | ||| || || || | ||| | | ||| Sbjct 281864 CTGCATCGCGAATTATATCTGTTACTCGCTCTTTTGATGG----TTTTTGAACAATATAA 281809 Query 13864 AAA----TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13919 || ||||||| |||||||||||||| | || ||||| | | |||||| || || Sbjct 281808 GAAAACATTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTA 281749 Query 13920 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC 13979 |||||||| | ||||||||| | || ||||| || | |||||| || |||||||| Sbjct 281748 GAAAATGTCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTT 281689 Query 13980 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14039 || |||||||| ||||| || || || ||||| || | | ||||||| || | ||| Sbjct 281688 CCTGAAAAGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCA 281629 Query 14040 TTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 14099 || || | ||||| | |||||| |||| || || |||| | || ||| ||| Sbjct 281628 TTCTTACTGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTT 281569 Query 14100 TCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTAT--GTATCAATAA 14157 ||||||||||| || | | |||| ||||||| | | |||| ||| || ||||| | Sbjct 281568 TCAATAGCATTGAAAAGAAATTCTTTCTCTT--CTGGGTCAAATATATAAGTGTCAATGA 281511 Query 14158 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC 14217 | ||||||||||| || || || ||||| || || || || |||||||||||||| | Sbjct 281510 GAGTACTATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAAC 281451 Query 14218 TAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14276 ||| || | ||||||||| || | ||||| || | | |||||||| || || Sbjct 281450 GAGCCTCAGTTACTTGTACTTCTTGACT-GAATCTCTCTACAAGGTTTTCATTTACAATT 281392 Query 14277 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14336 |||||| || |||||||| || | || | | ||| || | || ||||| Sbjct 281391 CCATCAGATGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGAC 281332 Query 14337 AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 | || | ||| | || | ||||||||||| |||||||| || |||||| || | Sbjct 281331 AACTTATCCCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAA 281272 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14456 || |||||| || ||| || |||| || ||| |||| |||||||| | ||| || Sbjct 281271 GCTTCAGCTTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAAC 281212 Query 14457 C-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485 | || ||| ||||| |||| | |||||| Sbjct 281211 CTTCTTGGAT-TTTCTCTAAGCAATGGTTC 281183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479704085559200