Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq12 340 2e-88 >seq12 Length=2314596 Score = 340 bits (376), Expect = 2e-88 Identities = 645/933 (69%), Gaps = 26/933 (3%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 ||| | || || || ||||||||||||| ||| | |||||||| || || || || || Sbjct 282102 GAAGTGACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCA 282043 Query 13414 TCCAGTG-ATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACT-TTATCAC 13471 || |||| | || || | |||||| || || ||||| || |||| | | | ||||||| Sbjct 282042 TC-AGTGGAAATTTTGTTCATAAAGTCAAACGGATTC-TTAACATTATAAATCTTATCAC 281985 Query 13472 AACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC 13531 |||| | |||| ||| | | ||||| | ||| || ||||| |||||||| | | | Sbjct 281984 AACCCAACTCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGC 281925 Query 13532 AATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACA 13591 |||||||||| ||||| ||||||| | || |||||||||||| | ||| || | Sbjct 281924 AATTCATACCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAA 281865 Query 13592 CAGCCTCGTTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650 | || ||| || ||| | ||| | || || || || | ||| | | || Sbjct 281864 CTGCATCGCGAATTATATCTGTTACTCGC-TCTTTTGATGG----TTTTTGAACAATATA 281810 Query 13651 AAAA----TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 | || ||||||| |||||||||||||| | || ||||| | | |||||| || || Sbjct 281809 AGAAAACATTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATT 281750 Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766 |||||||| | ||||||||| | || ||||| || | |||||| || ||||| || Sbjct 281749 AGAAAATGTCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACT 281690 Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 ||| |||||||| ||||| || || || ||||| || | | ||||||| || | ||| Sbjct 281689 TCCTGAAAAGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGC 281630 Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886 || || | ||||| | |||||| |||| || || |||| | || ||| || Sbjct 281629 ATTCTTACTGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGT 281570 Query 13887 TTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTAT--GTATCAATA 13944 ||| || |||||||| | | ||| ||||||| | | |||| ||| || ||||| Sbjct 281569 TTCAATAGCATTGAAAAGAAATTCTTTCTCTT--CTGGGTCAAATATATAAGTGTCAATG 281512 Query 13945 AGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACAT 14004 || ||||||||||| || || || ||||| || || || || ||||||||||| || Sbjct 281511 AGAGTACTATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAA 281452 Query 14005 CTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | ||| || | |||||| || || | ||||| ||| | | ||||||||| ||||| Sbjct 281451 CGAGCCTCAGTTACTTGTACTTCTTGACT-GAATCTCTCTACAAGGTTTTCATTTACAAT 281393 Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14123 |||||| || |||||||| || | || | | ||| || | || ||||| Sbjct 281392 TCCATCAGATGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGA 281333 Query 14124 GAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14183 | || | ||| | ||| | ||||||||||| |||||||| || |||||| || Sbjct 281332 CAACTTATCCCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGA 281273 Query 14184 AGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||| |||||| || ||| || |||| || ||| |||| |||||||| | ||| || Sbjct 281272 AGCTTCAGCTTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAA 281213 Query 14244 ---TCTTGAAGATGTTTCTTTAAGAATTGGCTC 14273 ||||| ||| ||||| |||| | ||| || Sbjct 281212 CCTTCTTG--GAT-TTTCTCTAAGCAATGGTTC 281183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478564942348320