Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq12 340 2e-88
>seq12
Length=2314596
Score = 340 bits (376), Expect = 2e-88
Identities = 645/933 (69%), Gaps = 26/933 (3%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
||| | || || || ||||||||||||| ||| | |||||||| || || || || ||
Sbjct 282102 GAAGTGACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCA 282043
Query 13414 TCCAGTG-ATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACT-TTATCAC 13471
|| |||| | || || | |||||| || || ||||| || |||| | | | |||||||
Sbjct 282042 TC-AGTGGAAATTTTGTTCATAAAGTCAAACGGATTC-TTAACATTATAAATCTTATCAC 281985
Query 13472 AACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC 13531
|||| | |||| ||| | | ||||| | ||| || ||||| |||||||| | | |
Sbjct 281984 AACCCAACTCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGC 281925
Query 13532 AATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACA 13591
|||||||||| ||||| ||||||| | || |||||||||||| | ||| || |
Sbjct 281924 AATTCATACCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAA 281865
Query 13592 CAGCCTCGTTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650
| || ||| || ||| | ||| | || || || || | ||| | | ||
Sbjct 281864 CTGCATCGCGAATTATATCTGTTACTCGC-TCTTTTGATGG----TTTTTGAACAATATA 281810
Query 13651 AAAA----TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706
| || ||||||| |||||||||||||| | || ||||| | | |||||| || ||
Sbjct 281809 AGAAAACATTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATT 281750
Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766
|||||||| | ||||||||| | || ||||| || | |||||| || ||||| ||
Sbjct 281749 AGAAAATGTCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACT 281690
Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826
||| |||||||| ||||| || || || ||||| || | | ||||||| || | |||
Sbjct 281689 TCCTGAAAAGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGC 281630
Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886
|| || | ||||| | |||||| |||| || || |||| | || ||| ||
Sbjct 281629 ATTCTTACTGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGT 281570
Query 13887 TTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTAT--GTATCAATA 13944
||| || |||||||| | | ||| ||||||| | | |||| ||| || |||||
Sbjct 281569 TTCAATAGCATTGAAAAGAAATTCTTTCTCTT--CTGGGTCAAATATATAAGTGTCAATG 281512
Query 13945 AGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACAT 14004
|| ||||||||||| || || || ||||| || || || || ||||||||||| ||
Sbjct 281511 AGAGTACTATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAA 281452
Query 14005 CTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063
| ||| || | |||||| || || | ||||| ||| | | ||||||||| |||||
Sbjct 281451 CGAGCCTCAGTTACTTGTACTTCTTGACT-GAATCTCTCTACAAGGTTTTCATTTACAAT 281393
Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14123
|||||| || |||||||| || | || | | ||| || | || |||||
Sbjct 281392 TCCATCAGATGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGA 281333
Query 14124 GAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14183
| || | ||| | ||| | ||||||||||| |||||||| || |||||| ||
Sbjct 281332 CAACTTATCCCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGA 281273
Query 14184 AGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
||| |||||| || ||| || |||| || ||| |||| |||||||| | ||| ||
Sbjct 281272 AGCTTCAGCTTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAA 281213
Query 14244 ---TCTTGAAGATGTTTCTTTAAGAATTGGCTC 14273
||||| ||| ||||| |||| | ||| ||
Sbjct 281212 CCTTCTTG--GAT-TTTCTCTAAGCAATGGTTC 281183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478564942348320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |