Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq218 118 8e-22 seq428 104 2e-17 seq44 82.4 6e-11 seq25 82.4 6e-11 >seq218 Length=661058 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| |||||||||| || ||||| || || | |||||||| ||||| || | | || Sbjct 352168 TAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCATC 352227 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 ||||||||||| |||||||||||||| || || || || | || | ||||||||| || Sbjct 352228 TTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTC 352287 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 |||| | || || | ||| |||||| | || || || | || || || Sbjct 352288 CTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACTTCCAGTGTGATGGT 352347 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| |||| ||||| |||||||||||||| Sbjct 352348 TTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||| |||||||||| || ||||| || || | |||||||| ||| Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | || |||||||| || || ||||||||||| || ||||| || | || Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | || || | ||| |||||| | || || Sbjct 357355 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACT 357414 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAA 43099 || | || || ||||| || ||||| || || |||| Sbjct 357415 TCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAACAA 357451 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| | |||||||||| |||| || ||||| | ||| |||||||| Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| |||||| || ||||| || || | ||| ||||| | || Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || |||| || | ||| ||| || | || || Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || || || || ||||| ||||||||||| Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || || |||||||| | || ||||| || | ||| ||||| || Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || ||||| ||||| ||||||||||| | || |||||||| | || Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || || ||||||| | | | ||| || | ||| || Sbjct 356118 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACT 356177 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||||||||| || |||| ||||| || || |||||||| Sbjct 356178 TCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 >seq428 Length=160056 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || |||||| |||||||| | || |||||||| | |||||||| ||| Sbjct 129670 CCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGAC 129611 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || |||||||| | || ||||| || | || Sbjct 129610 AAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGA 129551 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | ||| ||| | ||||| Sbjct 129550 ATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACC 129491 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || |||| ||| ||||| || |||||||| Sbjct 129490 TCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq44 Length=1668621 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 45660 TGCGGATTGAAGTGCTCGCCGGCCGACGTACAACCGTTGCTCGTATCACCAAATTCGTGC 45719 ||||||||||| || | ||||| || |||| |||||| | | ||||||||||||||| Sbjct 465988 TGCGGATTGAAATGAGCACCGGCTGAAATACAGCCGTTGGTGTTGTCACCAAATTCGTGC 465929 Query 45720 ACATGAAATCCGTGG 45734 ||||||||||||||| Sbjct 465928 ACATGAAATCCGTGG 465914 >seq25 Length=1883024 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||||||||| || | || || || || | || || || || | ||||| | || Sbjct 1512039 TAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCATC 1512098 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || ||||| || || || ||||| || | ||||||||| | || | |||||| || || Sbjct 1512099 TTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTGTC 1512158 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 ||| | | || || | | | |||||| | || || || | || || || Sbjct 1512159 TTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATTGT 1512218 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||||| ||||||||||||||||||||||| Sbjct 1512219 TTTTCCGGTAAGAGTTTTCACAAAAATTTGCAT 1512251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381351064007304