Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq310 475 5e-129 seq12 347 2e-90 >seq310 Length=366558 Score = 475 bits (526), Expect = 5e-129 Identities = 1225/1852 (66%), Gaps = 31/1852 (2%) Strand=Plus/Plus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || | || ||| ||||| || ||||| | || ||||||| |||||||| || Sbjct 100544 TTTTGTTCTTAAATAATACATACCAGTTTTCAAGCCCTTCTTCCATCCATAAAAATGAAT 100603 Query 70887 ACTCGTTAGT--TTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGA 70944 || | | ||| |||| | || | | || |||||||| | ||||| || || Sbjct 100604 GGACGACATTACTTG--ATAGTTTGGCTTTTCAATATGAATATTTAAAGACTGGCTCTGG 100661 Query 70945 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 71004 || || |||||||| | ||||| ||||| |||| || || |||| ||||||||| Sbjct 100662 TCAATAAAGGCTCCACGATCTGCCGCCATGTTTAAAATTACTTTCTGTGAAATTTCCCAC 100721 Query 71005 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCA 71061 | ||||||||| | || ||||| || |||| || |||| ||||| || ||| Sbjct 100722 ACAGTTTTATATATCTTTTTCATATCATCGGGAATTCCTGGAATATTTTGAATTGAGCCA 100781 Query 71062 CCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACT 71121 | || |||| || | ||||| ||| | |||| ||| | | | ||| || ||| || Sbjct 100782 CAATTGGCAAGAACCTGGTTTTTCATCACGTCATCCCACAGTCCTAACTCAGTCAAATCT 100841 Query 71122 CTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATA 71181 ||||| | |||| | || || || |||||||||||| || || | | || || | | Sbjct 100842 CTAAGCAAATGATGGTTGACAACGAAAAATTCTCCAGATAAAACGCGTCTTGTATATAGA 100901 Query 71182 TTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 71241 || || || ||||| || || |||||||| ||||||||||| || ||||| || || Sbjct 100902 TTCGAAGTGTATGGTTCTACAGATTCATTATTACCCAAAATTTGGGCTGTTGAAGCGGTA 100961 Query 71242 GGCATAGGTGCCACCAATAGACTATTTCTAAGACCATG-TGATCGGATTTTATCTTTTAG 71300 ||||| || || | | || |||||||| ||| | | | | ||||| |||| | Sbjct 100962 GGCATTGGGGCAAGAAGTAATGAATTTCTAATACCGTACTTAGCA-ATTTTCGCTTTCAA 101020 Query 71301 AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCC 71360 || |||||| ||| | || | || || || Sbjct 101021 AGCACCCCAATCCCACAAGTCTGTGGGAGTTTTATTCCACATATCATACTGTAAAATCCC 101080 Query 71361 GTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCAC 71419 || || | | | | ||| |||| || || || || ||||| || || | ||||| Sbjct 101081 CTTGCTTACAGGACTA-CCTTCATAAGTGGAATAAGGACCATCTTTCTCTGCGATTTCAC 101139 Query 71420 AACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTG 71479 | || || || | ||| || ||||| | ||||||||||| | | ||| || | | Sbjct 101140 AGCTTGCTTCAAGTGCACCGTAATACAAAGTTTCGAAAATTTGTTGATTAAGTTTCGCAG 101199 Query 71480 CTTCCGGGCTATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACG 71538 |||| ||||| ||| | | || ||| | |||||| || || ||||| ||||| || Sbjct 101200 CTTCAGGGCTGTCATAAGC-TATACGAAGTAAAATAAAAGCATCGGCTAAACCTTGTACA 101258 Query 71539 CCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAA 71598 || || || || |||||||| ||| ||| || ||| || ||||| | ||||||||| Sbjct 101259 CCGATTCCAATCGGTCTGTGCCTCACATTTGAGGTTTTGGCCTCTGGTACGGGATAATAA 101318 Query 71599 TTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTG 71658 |||| || |||||||| || || ||| | | |||||| | || |||| || Sbjct 101319 TTAACGTCGATAATTTTGTTTAGGTTTTTCGTAACAACTTTGGTGATTTCTTTTAACTTC 101378 Query 71659 AGAAAATCAAA---TCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGA 71712 |||||| | | | | ||| ||||||||| |||| |||| ||||||| | Sbjct 101379 TTAAAATCGTAGGATTTTCTATCGGGCGTTACAAACATATTCACTGCAAGCGATGCCAAA 101438 Query 71713 TTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTA 71772 ||||| || || || || | || | ||||| | |||||| ||||| | ||| || Sbjct 101439 TTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAACAATTTCTGTGCATAAATTGCTG 101498 Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832 | | || |||||||| ||||||||||| || ||| |||| || ||||| ||||| || Sbjct 101499 CTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTCTGTTGCATGCATCTTTATATAGC 101558 Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 71892 || || ||||| |||||||| | ||||| | || || || | ||| | |||| Sbjct 101559 ATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTATAGCATGCCACAATTTCTGAGCA 101618 Query 71893 TTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCG 71952 || | | ||||| | |||| ||| || | | ||| || |||| |||| Sbjct 101619 GGTACTTGAGAAATGTATTTACCTTCTGCTTCATACTTTTCATACAACTGTTCAAACTTT 101678 Query 71953 TCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCA 72012 ||||||||| || || | ||| ||||||| || |||||||||| |||||| | ||| Sbjct 101679 TCTCCCCAATTATCGTAAAGTCCGGGACATTGATGAGGACACATCAGTGACCAGTGCCCA 101738 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 72072 | | | |||| ||||||||| | ||| || ||||| || || ||| | |||||| Sbjct 101739 TTTTGTTCAACTCTTTTCATAAACAAATCTGGTATCCATAGGGCATAAAACAAATCTCTT 101798 Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132 | ||| ||| || ||||||||||| ||||| | || | || | | || || | | Sbjct 101799 GCTCTCATCTCTTCTTTTCCTGTATTTTTTTTCAAATTTAAAAATTCAAATATGTCTGCA 101858 Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| ||||| | || || || | | | || || | ||||| ||||| ||||||| Sbjct 101859 TGCCATGGTTCAAGATAGATAGCAAAAGCACCAGGTCTCTTGTTACCTCCTTGATCTACA 101918 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 ||||| || |||||| |||| | | ||| |||| | ||| || || | || ||| Sbjct 101919 TATCTGGCTAAATTATTAAAAACACGAAGCATAGGAACTAAACCGTTCGAAGTGCCGTTG 101978 Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCT 72312 || || | || | || || | ||||| |||||| | || || | || ||| Sbjct 101979 GTGCCTGCTATGAAACTACCTTTAGCACGTATATTGTGCACGCTTATGCCCAAACCACCT 102038 Query 72313 GCCATTTTAGAGATTAATGCGCATCGT--TTTAACGTATCATAGATGCCCTCTATACTAT 72370 ||| |||||| || | || | | || | ||| | | | | ||||| || || |||| Sbjct 102039 GCCGATTTAGAAATGAGAGCAC-TTGTAGTCAAACAT-TTACAAATGCCTTCAATGCTAT 102096 Query 72371 CATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT--TCCC-GCA 72426 |||| || || || || ||||| || | | ||| | || || |||| || Sbjct 102097 CATCAGGCATTGCTACCAAG-AAACACGATGAAA---GCTGAGGTCTTGTGGTCCCAGCT 102152 Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 || | |||||| || || || || || || |||| || ||||||||| || Sbjct 102153 GAGAACAGAGTAGGACTTGCATGTGTGAAAAATCGATCTGACATTAAATTGTACGTTTCT 102212 Query 72487 ATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 || || | |||||||| | || || || || || || ||||| | ||| || ||| Sbjct 102213 ATTGCGGCATCTATATCTTTATAGTGAATGCCCACAGCAACTCGCATAAGCATGTGTTGA 102272 Query 72547 GGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 72606 |||||||| ||||| || || | |||||| | || || ||| |||||||||||| Sbjct 102273 GGTCTTTCGACGATTTTTCCGTTGACTTTCAAGAGATACGAACGTTCTAAAGTTTTAAAA 102332 Query 72607 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 |||||||| ||||| ||||| || || || || | ||||| ||||| |||| Sbjct 102333 CCAAAATAATTGTAGGAAAAATCGCGATCATAGACGATAACGGAATTCAGTT 102384 >seq12 Length=2314596 Score = 347 bits (384), Expect = 2e-90 Identities = 623/904 (69%), Gaps = 17/904 (2%) Strand=Plus/Minus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 ||||| || ||||| |||||||| || ||||| || ||||| ||||| || || Sbjct 282096 ACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTG 282037 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || || | ||| || ||||||||||| ||||||||||||| || | | | ||||| Sbjct 282036 GAAATTTTGTTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAAC 281977 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 || | | | || || | ||||| ||||| ||||| || |||||||| Sbjct 281976 TCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATA 281917 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || || || | || || | ||| |||| | |||||| |||||||| || || || Sbjct 281916 CCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCG 281857 Query 42005 GTTATAATAGATCTTACTGTTTCTTCACTCGGTGGAT-----ACAATAAATGTTTAAACA 42059 || ||| | ||||| |||| | | ||| | |||||| | | ||||| Sbjct 281856 CGAATTATATCTGTTACTCGCTCTT---TTGATGGTTTTTGAACAATATAAGA--AAACA 281802 Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 | ||||| || ||||| || |||| ||| ||||| | | ||| | || || ||||| | Sbjct 281801 TTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATG 281742 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 | ||||| ||||| || || || || || |||||||| |||| ||||| ||| |||| Sbjct 281741 TCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAA 281682 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCA- 42238 |||| |||||||| || || ||||| |||| || || ||| | ||| | | | Sbjct 281681 AGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTAC 281622 Query 42239 TGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 || ||||| | |||||||||| |||||||| || ||||||||||| ||||| || | Sbjct 281621 TGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAG 281562 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT--GTATCGATCAAAAGACT 42354 |||| || ||| | | ||| || | || | || |||| || || || | | ||| Sbjct 281561 CATTGAAAAGAAATTCTTTCTCTT--CTGGGTCAAATATATAAGTGTCAATGAGAGTACT 281504 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||||||||||||| || ||||||||||| || || || || || || || | ||||| Sbjct 281503 ATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTC 281444 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 || || ||||||||| || |||| || | | ||||| || || ||||| ||| Sbjct 281443 AGTTACTTGTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGA 281384 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534 || |||||||| || | ||||||| || |||| |||| || || || |||| Sbjct 281383 TGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATC 281324 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| | | || ||||| | |||||||||||| ||||| || || ||||| || Sbjct 281323 CCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGC 281264 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 | || ||| | | ||| || || |||||||||| || || || || || || |||| Sbjct 281263 TTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTCTTGG 281204 Query 42655 ATTT 42658 |||| Sbjct 281203 ATTT 281200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671105743710880