Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq44 111 2e-19
seq310 107 2e-18
seq218 107 2e-18
seq428 104 2e-17
>seq44
Length=1668621
Score = 111 bits (122), Expect = 2e-19
Identities = 120/158 (76%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 60391 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGAT-- 60448
||||| | ||| || | ||| || ||||||||||| | || | || || |||||||
Sbjct 466054 GCTTCTACGTTTCCAAGATCGCCAACGTGTCTCACGTCTGCATCAGGAGCTCCATGATCT 465995
Query 60449 -TGCTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCA 60507
|| || || |||| ||||| | ||||| ||| ||||||||||| || |||| |||
Sbjct 465994 TTGTTATGCG---GATTGAAATGAGCACCGGCTGAAATACAGCCGTTGGTGTTGTCACCA 465938
Query 60508 AATTCGTGTACGTGAAAACCGTGCAGTCCTTTCGGCAA 60545
|||||||| || ||||| ||||| |||||||||| |||
Sbjct 465937 AATTCGTGCACATGAAATCCGTGGAGTCCTTTCGTCAA 465900
>seq310
Length=366558
Score = 107 bits (118), Expect = 2e-18
Identities = 366/569 (64%), Gaps = 11/569 (2%)
Strand=Plus/Plus
Query 157047 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTA 157106
|||| || |||| ||| || | |||||| || ||| |||||| || | ||||| |
Sbjct 101416 TATTCACTGCAAGCGATGCCAAATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAA 101475
Query 157107 CTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGC 157166
| ||||| | || |||||||||| | | || ||| | || |||||||||||| |
Sbjct 101476 CAATTTCTGTGCATAAATTGCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTC 101535
Query 157167 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGA 157226
|||||| || || || |||| |||| | || || || |||||| ||||| | || |
Sbjct 101536 TGTTGCATGCATCTTTATATAGCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTA 101595
Query 157227 TGTTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGAA----ACTGGCCTTTATCCTCG 157282
| || ||| | | ||| | || | ||| | | |||| | ||
Sbjct 101596 TAGCATGCCACAATTT----CTGAGCAGGTACTTGAGAAATGTATTTACCTTCTGCTTCA 101651
Query 157283 TAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCG 157342
|| | || ||| | | |||||| | || || | |||||| || ||||| |
Sbjct 101652 TACTTTTCATACAACTGTTCAAACTTTTCTCCCCAATTATCGTAAAGTCCGGGACATTGA 101711
Query 157343 TTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGA 157402
| ||||||||| | |||||| || |||| |||||| | ||||||||| | ||| ||
Sbjct 101712 TGAGGACACATCAGTGACCAGTGCCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGT 101771
Query 157403 ACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGC 157462
| ||||| || | | |||||| | ||| | | ||||| | || | ||| |
Sbjct 101772 ATCCATAGGGCATAAAACAAATCTCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTC 101831
Query 157463 ATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCT 157522
| | ||||| || | ||||| |||||| ||||||| || | || || ||
Sbjct 101832 AAATTTAAAAATTCAAATATGTCTGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCA 101891
Query 157523 TTTCGCTTG---CCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATT 157579
|| |||| || |||||||| || | | | | |||||||||||| || |||||
Sbjct 101892 GGTCTCTTGTTACCTCCTTGATCTACATATCTGGCTAAATTATTAAAAACACGAAGCATA 101951
Query 157580 GGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608
|| | | ||| | | |||||||| ||
Sbjct 101952 GGAACTAAACCGTTCGAAGTGCCGTTGGT 101980
>seq218
Length=661058
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| | ||| ||||| ||||| | ||| ||||| || ||||||||||| |
Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || ||||| | ||||||||| ||| | |||| ||||||||| || |||||
Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| || || || | | ||| | ||||| | |||||||||
Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || || || || || ||||| || || ||||||||
Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| | ||||||||||||||||| || |||||||| || ||||||||||| |
Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| || ||||| || || || |||||| | || | | ||| || || || ||
Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || ||||| || |||||| |||| | || | ||||| | ||||||||
Sbjct 356802 ATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACC 356861
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | || || || || | ||| || || || || |||||
Sbjct 356862 TCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908
Score = 102 bits (112), Expect = 8e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| || | | || ||||| | || ||||||||||| || || ||||||
Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | ||||| |||||||| || ||| |||| | | |||||||| || ||
Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||||||||| ||||||| ||| | | || | || || | ||||| |||
Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| | ||| | ||| || || || | || || ||||| ||||||||| ||
Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATACCT 356684
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| | ||||||||||||||| | || ||||||||||| || ||||| ||
Sbjct 356226 CCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAA 356285
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| | || || |||||| | || |||||||| || || |||||
Sbjct 356286 AGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 356345
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| |||||| ||| | | ||| | || || | || || |||
Sbjct 356346 ATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACT 356405
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | ||||| || || | || ||||| || || |||||
Sbjct 356406 TCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | ||| ||||| ||||| | ||| ||||| || ||||||||||| |
Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| || ||||| | ||| ||||||||| | |||| |||||| || || |||||
Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| || || || | | ||| | ||||| | |||||||||
Sbjct 357355 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACT 357414
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172
|| | || | || || || || | ||| || ||
Sbjct 357415 TCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAAC 357449
>seq428
Length=160056
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032
|| || ||||| | ||| ||||| ||||| ||||||||||| || || | |||
Sbjct 129655 AAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCT 129596
Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092
|| | |||||| |||||| | || |||||||| || || || || || |||||||| ||
Sbjct 129595 TCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCT 129536
Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152
|||||| || | | ||| | || || | ||||| || || | ||| | |||
Sbjct 129535 TGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTC 129476
Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || || || || || ||||||||||||||
Sbjct 129475 TTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506989125332160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |