Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq44 111 2e-19 seq310 107 2e-18 seq218 107 2e-18 seq428 104 2e-17 >seq44 Length=1668621 Score = 111 bits (122), Expect = 2e-19 Identities = 120/158 (76%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 60391 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGAT-- 60448 ||||| | ||| || | ||| || ||||||||||| | || | || || ||||||| Sbjct 466054 GCTTCTACGTTTCCAAGATCGCCAACGTGTCTCACGTCTGCATCAGGAGCTCCATGATCT 465995 Query 60449 -TGCTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCA 60507 || || || |||| ||||| | ||||| ||| ||||||||||| || |||| ||| Sbjct 465994 TTGTTATGCG---GATTGAAATGAGCACCGGCTGAAATACAGCCGTTGGTGTTGTCACCA 465938 Query 60508 AATTCGTGTACGTGAAAACCGTGCAGTCCTTTCGGCAA 60545 |||||||| || ||||| ||||| |||||||||| ||| Sbjct 465937 AATTCGTGCACATGAAATCCGTGGAGTCCTTTCGTCAA 465900 >seq310 Length=366558 Score = 107 bits (118), Expect = 2e-18 Identities = 366/569 (64%), Gaps = 11/569 (2%) Strand=Plus/Plus Query 157047 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTA 157106 |||| || |||| ||| || | |||||| || ||| |||||| || | ||||| | Sbjct 101416 TATTCACTGCAAGCGATGCCAAATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAA 101475 Query 157107 CTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGC 157166 | ||||| | || |||||||||| | | || ||| | || |||||||||||| | Sbjct 101476 CAATTTCTGTGCATAAATTGCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTC 101535 Query 157167 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGA 157226 |||||| || || || |||| |||| | || || || |||||| ||||| | || | Sbjct 101536 TGTTGCATGCATCTTTATATAGCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTA 101595 Query 157227 TGTTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGAA----ACTGGCCTTTATCCTCG 157282 | || ||| | | ||| | || | ||| | | |||| | || Sbjct 101596 TAGCATGCCACAATTT----CTGAGCAGGTACTTGAGAAATGTATTTACCTTCTGCTTCA 101651 Query 157283 TAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCG 157342 || | || ||| | | |||||| | || || | |||||| || ||||| | Sbjct 101652 TACTTTTCATACAACTGTTCAAACTTTTCTCCCCAATTATCGTAAAGTCCGGGACATTGA 101711 Query 157343 TTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGA 157402 | ||||||||| | |||||| || |||| |||||| | ||||||||| | ||| || Sbjct 101712 TGAGGACACATCAGTGACCAGTGCCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGT 101771 Query 157403 ACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGC 157462 | ||||| || | | |||||| | ||| | | ||||| | || | ||| | Sbjct 101772 ATCCATAGGGCATAAAACAAATCTCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTC 101831 Query 157463 ATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCT 157522 | | ||||| || | ||||| |||||| ||||||| || | || || || Sbjct 101832 AAATTTAAAAATTCAAATATGTCTGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCA 101891 Query 157523 TTTCGCTTG---CCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATT 157579 || |||| || |||||||| || | | | | |||||||||||| || ||||| Sbjct 101892 GGTCTCTTGTTACCTCCTTGATCTACATATCTGGCTAAATTATTAAAAACACGAAGCATA 101951 Query 157580 GGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608 || | | ||| | | |||||||| || Sbjct 101952 GGAACTAAACCGTTCGAAGTGCCGTTGGT 101980 >seq218 Length=661058 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| ||||| ||||| | ||| ||||| || ||||||||||| | Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||| ||| | |||| ||||||||| || ||||| Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | ||| | ||||| | ||||||||| Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || || ||||| || || |||||||| Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||||||||||||||||| || |||||||| || ||||||||||| | Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || || || |||||| | || | | ||| || || || || Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || |||||| |||| | || | ||||| | |||||||| Sbjct 356802 ATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACC 356861 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | ||| || || || || ||||| Sbjct 356862 TCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | || ||||| | || ||||||||||| || || |||||| Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| |||||||| || ||| |||| | | |||||||| || || Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||||||| ||| | | || | || || | ||||| ||| Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||| || || || | || || ||||| ||||||||| || Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATACCT 356684 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||||||||||||||| | || ||||||||||| || ||||| || Sbjct 356226 CCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAA 356285 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | || || |||||| | || |||||||| || || ||||| Sbjct 356286 AGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 356345 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | || || | || || ||| Sbjct 356346 ATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACT 356405 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || | || ||||| || || ||||| Sbjct 356406 TCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| ||||| ||||| | ||| ||||| || ||||||||||| | Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||| ||||||||| | |||| |||||| || || ||||| Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | ||| | ||||| | ||||||||| Sbjct 357355 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACT 357414 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 || | || | || || || || | ||| || || Sbjct 357415 TCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAAC 357449 >seq428 Length=160056 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || || ||||| | ||| ||||| ||||| ||||||||||| || || | ||| Sbjct 129655 AAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCT 129596 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | |||||| |||||| | || |||||||| || || || || || |||||||| || Sbjct 129595 TCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCT 129536 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||||| || | | ||| | || || | ||||| || || | ||| | ||| Sbjct 129535 TGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTC 129476 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || || || |||||||||||||| Sbjct 129475 TTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506989125332160