Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq428 122 6e-23
seq25 120 2e-22
seq218 109 4e-19
>seq428
Length=160056
Score = 122 bits (134), Expect = 6e-23
Identities = 167/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200
|||| || || || | || ||||||||||||||||| || ||||| || ||||||||||
Sbjct 129672 CACCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAG 129613
Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260
||||| | | || |||||||| |||||| ||| |||| |||||| ||||| | |
Sbjct 129612 ACAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTG 129553
Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317
| || |||||||| || | | | ||| || || ||| || || ||| ||||
Sbjct 129552 GAATTCCTTCTTTATCTTGGATTTTTGCC---TTCACATTTTCGATTGTATCGGACGGTT 129496
Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || | ||| || || || ||||| | ||| || ||||| ||||||||
Sbjct 129495 CGACCTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444
>seq25
Length=1883024
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| |||||||| || |||||||| || || ||||| ||||| || || || || |||||
Sbjct 1512024 ACCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGA 1512083
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
| | | | || || |||||||| ||| || ||||| | || || || | ||
Sbjct 1512084 AAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGG 1512143
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| ||||| || || |||| | ||||| ||| || ||||| ||||| |||
Sbjct 1512144 AATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAAC 1512203
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || || || |||||||| ||||||||||| || ||||||||||||
Sbjct 1512204 CTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCATG 1512252
>seq218
Length=661058
Score = 109 bits (120), Expect = 4e-19
Identities = 170/241 (71%), Gaps = 8/241 (3%)
Strand=Plus/Plus
Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192
||||| || || ||||| | || || |||||||| | || |||||| || || ||
Sbjct 352144 AATCTGCATTCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTT 352203
Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252
||||||||||||| | || |||||||| || || ||| || |||||||||||
Sbjct 352204 GTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTG 352263
Query 33253 GTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309
||| | || || |||||||| || | | | ||| || || ||| ||| |||||
Sbjct 352264 GTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCC---TTCACGTTTTCAATTGTGTC 352320
Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||| || ||||| || || |||||||| || | ||||| || |||||||||||
Sbjct 352321 TGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380
Query 33370 G 33370
|
Sbjct 352381 G 352381
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| || | | |||||||| | || || |||||||| ||||| ||||| ||
Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| | | || |||| ||| ||||| ||| ||||| | ||||| || | ||
Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573
Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322
||||||||||| || ||| ||| || | | ||| || || |||| |||
Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633
Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| | ||| |||||||| || || || || || ||||||||||||||
Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318762106213224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |