Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq428 122 6e-23 seq25 120 2e-22 seq218 109 4e-19 >seq428 Length=160056 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| || || || | || ||||||||||||||||| || ||||| || |||||||||| Sbjct 129672 CACCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAG 129613 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 ||||| | | || |||||||| |||||| ||| |||| |||||| ||||| | | Sbjct 129612 ACAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTG 129553 Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | || |||||||| || | | | ||| || || ||| || || ||| |||| Sbjct 129552 GAATTCCTTCTTTATCTTGGATTTTTGCC---TTCACATTTTCGATTGTATCGGACGGTT 129496 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || || || ||||| | ||| || ||||| |||||||| Sbjct 129495 CGACCTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq25 Length=1883024 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || |||||||| || || ||||| ||||| || || || || ||||| Sbjct 1512024 ACCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGA 1512083 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || |||||||| ||| || ||||| | || || || | || Sbjct 1512084 AAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGG 1512143 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| | ||||| ||| || ||||| ||||| ||| Sbjct 1512144 AATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAAC 1512203 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || |||||||| ||||||||||| || |||||||||||| Sbjct 1512204 CTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCATG 1512252 >seq218 Length=661058 Score = 109 bits (120), Expect = 4e-19 Identities = 170/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| | || || |||||||| | || |||||| || || || Sbjct 352144 AATCTGCATTCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTT 352203 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||||||||||| | || |||||||| || || ||| || ||||||||||| Sbjct 352204 GTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTG 352263 Query 33253 GTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309 ||| | || || |||||||| || | | | ||| || || ||| ||| ||||| Sbjct 352264 GTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCC---TTCACGTTTTCAATTGTGTC 352320 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || ||||| || || |||||||| || | ||||| || ||||||||||| Sbjct 352321 TGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Query 33370 G 33370 | Sbjct 352381 G 352381 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || | | |||||||| | || || |||||||| ||||| ||||| || Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || |||| ||| ||||| ||| ||||| | ||||| || | || Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||||||||| || ||| ||| || | | ||| || || |||| ||| Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| |||||||| || || || || || |||||||||||||| Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318762106213224