Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq12 340 2e-88 >seq12 Length=2314596 Score = 340 bits (376), Expect = 2e-88 Identities = 620/892 (70%), Gaps = 18/892 (2%) Strand=Plus/Minus Query 12857 ATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATA 12916 || ||||||||||| | ||| | |||||||| || ||||| || || || ||||| Sbjct 282090 ATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTGGAAATT 282031 Query 12917 TTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC--CCTAATTCTA 12974 || | |||||| || || ||||| || |||| || | | || ||| || || |||| Sbjct 282030 TTGTTCATAAAGTCAAACGGATTCTT--AACATTATAAATCTTATCACAACCCAACTCTA 281973 Query 12975 GTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTA 13034 ||| | | |||||| ||||| || || ||||| ||| | | || ||||| || | Sbjct 281972 CTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATACCAA 281913 Query 13035 TTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAA 13094 ||| ||||||||| ||| || |||||||| | | ||| || | |||||| ||| || Sbjct 281912 TTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCGCGAA 281853 Query 13095 CTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGAT--AGATGCTTAAACATCATAC 13151 ||| ||| ||| | || ||| | |||| ||||| | || |||||| | || Sbjct 281852 TTATATCTGTTACT-CGCTCTTTTGATGGTT--TTTGAACAATATAAGAAAACATTAAAC 281796 Query 13152 ATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGAC 13211 | ||||||||||| ||||| |||||||| | | || ||||| || |||||||| || | Sbjct 281795 AAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCAGTC 281736 Query 13212 CCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTA 13271 | |||||||| || ||||| || | |||||| ||||||||||| || ||||| || | Sbjct 281735 CTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGAAAA 281676 Query 13272 TTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCT 13330 ||||||| || |||||||| || | |||| | ||| | || ||| ||||| Sbjct 281675 TTCCTTCCACAGCTGCAAATGCAA-CAACTCGTTCTGGGAATGTTGCATTCTTACTGCTG 281617 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 ||||| | ||||| | || || | ||||| || ||| |||| || || || Sbjct 281616 ATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCATTG 281557 Query 13391 AATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 || | | |||| ||| ||| ||| || || |||||||| || || | ||||||| Sbjct 281556 AAAAGA-AATTCTTTCTCTT-CTGGGTCAAATATATAAGTGTCAATGAGAGTACTATACA 281499 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||||||||| |||||||| || || ||||||||||||||||| || | |||||| | || Sbjct 281498 TTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGTTA 281439 Query 13509 CCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | || ||||| || | ||||| ||| | | |||||| || || || || ||| ||| Sbjct 281438 CTTGTACTTCTTGACT-GAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCA 281380 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAA 13627 |||||||| ||||||| || ||| || | |||| | | ||||||||| ||| Sbjct 281379 GCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCAG 281320 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 | | || || || || | ||||| || || ||||| || ||||| |||| | | Sbjct 281319 TGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCC 281260 Query 13688 TTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTTC 13739 || ||| | ||| || || ||| ||| ||||| | ||| | |||| Sbjct 281259 TTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTC 281208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430961452639176