Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 255 1e-62 seq25 187 6e-42 seq218 172 1e-37 seq428 163 7e-35 >seq12 Length=2314596 Score = 255 bits (282), Expect = 1e-62 Identities = 610/914 (67%), Gaps = 19/914 (2%) Strand=Plus/Plus Query 268682 TTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGG 268741 |||| || | || ||| || || || |||||||| || || || || || ||| Sbjct 281193 TTAGAGAAAATCCAAGA-AGGTTCGTAATATTTCCTATTCAATATCCAGACATTTGGGAA 281251 Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 | |||||| | || | ||||| || ||||| |||||||||||| || ||| | ||| Sbjct 281252 AAGTACAAGGAAGCTGAAGCTTCCTTCTGGACAACAGAAGAAGTAGACCTTTCTAAGGAC 281311 Query 268802 TTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCG 268861 | | ||| | || || | || ||||| || || || || | ||||| Sbjct 281312 CTTGCCCACTGGGATAAGTTGTCAAATGATGAAAGGCATTTCATTTCACATGTACTTGCC 281371 Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921 |||||||| | |||||| || || || ||||| || ||||||| ||| ||||||| Sbjct 281372 TTTTTTGCTGCATCTGATGGAATTGTAAATGAAAACCTTGTAGAGAGATTCAGTCAAGAA 281431 Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981 ||||| | |||| || | || ||||| || ||||| || || || |||||||| ||| Sbjct 281432 GTACAAGTAACTGAGGCTCGTTGCTTTTATGGTTTCCAAATTGCCATTGAAAATATCCAT 281491 Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGA 269041 ||||| ||||| ||| | || || ||||||||| ||| || ||| ||||| | Sbjct 281492 TCAGAAATGTATAGTACTCTCATTGACACTTATATATTTGACC-CA--GAAGAGAAAGAA 281548 Query 269042 CTA-TTTTC--TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTG 269098 | ||||| | |||| ||| ||| ||||| | || || |||| |||||||| Sbjct 281549 TTTCTTTTCAATGCTATTGAAACCATGCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTT 281608 Query 269099 AAATGGATAAACGATAGC---GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTA 269155 | ||||| | | || || | | | |||| | | ||||| ||||| ||||| Sbjct 281609 CATTGGATCAGCAGTAAGAATGCAACATTCCCAGAACGAGTTGTTGCATTTGCAGCTGTG 281668 Query 269156 GAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTT 269215 ||||| || |||||||| || |||||| |||||||||||| | |||||| | || ||| Sbjct 281669 GAAGGAATTTTCTTTTCAGGAAGTTTTGCTGCTATCTTTTGGCTCAAGAAACGGGGTCTT 281728 Query 269216 ATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGAC 269275 ||||||||| | || || ||||| || | || | || |||||||| || || || Sbjct 281729 ATGCCAGGACTGACATTTTCTAATGAGCTTATTTCTCGCGATGAAGGTTTGCATTGTGAT 281788 Query 269276 TTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATAC 269335 || ||||||||| | ||| | |||| || || ||||| || |||| ||||| Sbjct 281789 TTTGCTTGTTTAATGTTTTC---TTATATTGTTCAAAAACCATCAAAAGAGCGAGTAACA 281845 Query 269336 GA---AATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCT 269392 || |||| ||| || ||| | ||| |||||| |||| || ||| | || Sbjct 281846 GATATAATTCGCGAT---GCAGTTAAAATTGAACAGGAATTTTTAACTGATGCTTTGCCT 281902 Query 269393 ATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGAT 269452 | || || ||||||||| ||||| |||| | ||||| | || ||| |||| Sbjct 281903 GTAAGCCTAATTGGTATGAATTGCAAACTGATGTCTCAGTATATCGAATTTGTAGCTGAC 281962 Query 269453 AGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTT 269512 | | | || || || | | ||| | ||||| ||| | ||||||||| ||| Sbjct 281963 CGTCTTTTAGTAGAGTTGGGTTGTGATAAGATTTATAATGTTAAGAATCCGTTTGACTTT 282022 Query 269513 ATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTAT 269572 ||| | || || || || || ||| | |||||||| || ||| ||| || | ||| Sbjct 282023 ATGAACAAAATTTCCACTGATGGCAAGACAAATTTCTTTGAAAAGAAAGTAGGTGAATAT 282082 Query 269573 CAGAAAATGGGTGT 269586 || || || || || Sbjct 282083 CAAAAGATTGGAGT 282096 >seq25 Length=1883024 Score = 187 bits (206), Expect = 6e-42 Identities = 163/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || |||||||||||||| ||||||||||| ||||| | || ||||||| ||| Sbjct 1512049 TGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCATCTTCTAATTGC 1512108 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| ||||||| |||||||||||||||||| || ||||| || || |||||||| Sbjct 1512109 TTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTC 1512168 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || ||||||||||| | || || ||||| ||||| || || || || || || ||| Sbjct 1512169 GCCTTTACATTTTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATTGTTTTTCCGGTA 1512228 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || ||||| Sbjct 1512229 AGAGTTTTCACAAAAATTTGCAT 1512251 >seq218 Length=661058 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| ||||| | ||| | ||||||||||||||| |||||||||||||| || Sbjct 355995 ATACCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCT 356054 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || ||||| | ||||| || |||||||| || | |||||||| || Sbjct 356055 GAAAGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGT 356114 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || ||||| || ||||||| ||||| || ||| Sbjct 356115 GGGATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCT 356174 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| |||||||| | |||||| || || || ||||| Sbjct 356175 ACTTCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || ||||| | ||| | || |||||||| ||||||||||| || Sbjct 356451 ATTCCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCG 356510 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| ||||||||||| ||||| |||| |||||| ||||| || Sbjct 356511 GAGAGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGT 356570 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || ||||| |||||||| ||||| || | ||||| ||||| Sbjct 356571 GGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCA 356630 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || || |||||||| || || || || || || ||||| Sbjct 356631 ACTTCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | |||| ||| | || |||||||| |||||||| |||||| Sbjct 356223 ATACCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCA 356282 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||||| || || |||||||||||||| | ||||| || ||| Sbjct 356283 GAAAGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGA 356342 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || ||||| || ||||| | ||||| || || Sbjct 356343 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCA 356402 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || ||||| |||||||| || |||||||| ||||||||| Sbjct 356403 ACTTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCATT 356453 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | |||| ||| | || ||||||||||| || || || ||| Sbjct 356679 ATACCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCA 356738 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || ||||| ||||| || || || ||||||||||||| || ||||| || || Sbjct 356739 GACAATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGT 356798 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| ||||| || || ||||| || |||| || || |||||| Sbjct 356799 GGAATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCT 356858 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || |||||||| ||||| || ||||| ||||||||| Sbjct 356859 ACCTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCATT 356909 Score = 141 bits (156), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || || ||||| | |||||||| ||||| | ||| || ||||||||| Sbjct 357271 TCTTTCTGAATGTTGTAATCAGACAATGTTCTACCATCTTCCAATTGCTTACCAGCAAAA 357330 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||||| || ||||| || |||||||| ||||| ||||| || || |||||| Sbjct 357331 ATCAAACGTTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTT 357390 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || |||||||| || ||||| || || |||||||| ||||| || ||| Sbjct 357391 TCAATTGTGTCTGACGGTTCTACTTCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAACA 357450 Query 104549 A 104549 | Sbjct 357451 A 357451 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | | || | ||| | ||| ||||||||||| || || ||| Sbjct 352151 ATTCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCA 352210 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||||||| ||||| | |||||| || |||||||| | | || || || ||| Sbjct 352211 GACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGA 352270 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || || ||||| | || || |||||| Sbjct 352271 GGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCT 352330 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || ||||| | ||||| ||||| || ||||| Sbjct 352331 ACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 >seq428 Length=160056 Score = 163 bits (180), Expect = 7e-35 Identities = 169/220 (77%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| || | ||| ||||| ||||| || || || || || ||||| | ||| | || | Sbjct 129656 TAAG-ACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCAT 129598 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||| | ||||||||||||||||||||| | ||||| ||||| || ||||||||||||| Sbjct 129597 CTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTAT 129538 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | || || ||||| || |||||||| | |||||| ||||| ||||||| || || | Sbjct 129537 CTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGG 129478 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 ||||||| || | || || || ||||| ||||| |||| Sbjct 129477 TCTTACCCGTTAAAGTCTTCACGAATATTTGCATCCTGTG 129438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151339567859504