Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25 145 7e-30 seq218 140 3e-28 seq428 122 8e-23 >seq25 Length=1883024 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| || || ||||||||||| || || ||||| || || | |||||| || Sbjct 1512025 CCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAA 1512084 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || | || || || | || ||||| || || ||||| |||||| Sbjct 1512085 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGA 1512144 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| || ||||| || ||| ||||| | | | || || Sbjct 1512145 ATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAACC 1512204 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 |||| ||||| |||||||| ||||||||||||||||| || |||||||| Sbjct 1512205 TCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCATGCT 1512254 >seq218 Length=661058 Score = 140 bits (154), Expect = 3e-28 Identities = 172/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||||||||| | ||||| || | ||| ||||| ||||| | |||||||| Sbjct 356450 CATTCCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATC 356509 Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 | | || || || ||| ||||| |||||||| |||||||||| || ||||||||| Sbjct 356510 GG--AGAGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCT 356567 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 || ||||| ||||||||||| | ||||||||| || || | | || || | | Sbjct 356568 GGTGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGT 356627 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| ||||| ||||| || || ||||| || || ||||| Sbjct 356628 TCAACTTCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 129 bits (142), Expect = 5e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||| | ||||| || || || | || ||||| || || | | Sbjct 356670 AAAATTTGCATACCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATG 356729 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| || || | ||| || ||||| || || |||| ||||||||||| Sbjct 356730 TTGTAATCAGACAATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGT 356789 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| |||||||| ||||| || | |||||| ||||| ||| | | |||||| Sbjct 356790 TGGTCTGGTGGAATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCA 356849 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 356850 GACGGTTCTACCTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908 Score = 122 bits (134), Expect = 8e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| ||||| | || || ||||| || | ||| || || || | Sbjct 352141 AAAAATCTGCATTCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAAT 352200 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| ||||| || ||| | ||| |||| ||||| ||| |||| || || | ||| Sbjct 352201 GTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTG 352260 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| ||||||||||||||||||||||| | || || ||||| ||| | | ||||| Sbjct 352261 CTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTC 352320 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||||||||| | ||||| ||||| || ||||| Sbjct 352321 TGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Query 95008 GC 95009 || Sbjct 352381 GC 352382 Score = 120 bits (132), Expect = 3e-22 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| | ||||| || || |||| ||| ||||| ||||| | || | Sbjct 356218 TTTGCATACCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGT 356277 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | || || || ||| || | ||| || || |||| |||| | ||| || Sbjct 356278 AGTCAG--AAAGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTG 356335 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||||||||||||||||| ||||| | |||||| || || ||| | | || |||| Sbjct 356336 GTCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGA 356395 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| |||||||||||||| || |||||||||||||| Sbjct 356396 TGGCTCAACTTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG--AA 94852 ||| ||||| || || ||||||||||| || | ||||||| || | || ||| | | Sbjct 356012 CAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAAT--CTGAAAGGGTTCGTCCA 356069 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| |||||| ||| |||| || | | ||| |||||||| || |||||||| ||| Sbjct 356070 TCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTG 356129 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || |||||| | | || |||| | || || |||| || || Sbjct 356130 TCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACTTCAAGGGTTATA 356189 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||||| || ||||| ||||| Sbjct 356190 GTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || || | ||| || ||||||||||||||||||||||| | || || ||||| || Sbjct 352022 ATCAAACGTTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTT 352081 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 | | ||||| | | || || || | ||||||||||||||||| || || || ||| Sbjct 352082 TCAATTGTGTCTGACGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAGTGTCTTAACA 352141 Query 94997 AAGATCTGCAT 95007 || |||||||| Sbjct 352142 AAAATCTGCAT 352152 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 ||| || ||||||||||||||||||||||| | || || ||||| ||| | | || Sbjct 357111 TTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTAACGTTTTCAATTGT 357170 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | | || || || | ||||||||||||||||| | ||||| ||||| || || Sbjct 357171 GTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTG 357230 Query 95005 CAT 95007 ||| Sbjct 357231 CAT 357233 >seq428 Length=160056 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||||| || ||||| ||||| || ||||||||||| | ||| ||||| | Sbjct 129670 CCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGAC 129611 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| |||||||| |||| |||| | ||| || || || ||| Sbjct 129610 AAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGA 129551 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | ||||||||||| || ||| || || | | ||||| Sbjct 129550 ATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACC 129491 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || | |||||||| || || || | ||| ||||| || || ||||| || Sbjct 129490 TCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCATCCT 129441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448268852683680