Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_006650.1 Length=18768 Score E Sequences producing significant alignments: (Bits) Value seq92 95.1 1e-15 >seq92 Length=975657 Score = 95.1 bits (104), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 11427 AGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCG 11486 ||||| | ||| | | || ||||| ||||||||||| | | || || ||||| | || Sbjct 496327 AGCCCTACTTTGACCTTTCAATTAAAATTATAAATATTAATGGTATAATTCCGGAATGCG 496268 Query 11487 AGACTTAttttactaaaattttctactcttttaggatcttttttcaaatttcagataact 11546 ||||| ||| | |||||||| || ||||||||| |||||||||| || || ||| || Sbjct 496267 GGACTTTTTTAAATAAAATTTCCTGCTCTTTTAGAATCTTTTTTCTGATCTCCTATATCT 496208 Query 11547 tcaata-tttttGA 11559 ||||| ||||||| Sbjct 496207 GCAATAGTTTTTGA 496194 Score = 89.7 bits (98), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 17955 AGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCG 18014 ||||| | ||| | | || ||||| ||||||||||| | | || || ||||| | || Sbjct 496327 AGCCCTACTTTGACCTTTCAATTAAAATTATAAATATTAATGGTATAATTCCGGAATGCG 496268 Query 18015 AGACTTattttactaaaattttctacttttttaggatcttttttcaaatttcagataact 18074 ||||| ||| | |||||||| || || |||||| |||||||||| || || ||| || Sbjct 496267 GGACTTTTTTAAATAAAATTTCCTGCTCTTTTAGAATCTTTTTTCTGATCTCCTATATCT 496208 Query 18075 tcaata-tttttGA 18087 ||||| ||||||| Sbjct 496207 GCAATAGTTTTTGA 496194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59936436128564