Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_006659.1
Length=41573
Score E
Sequences producing significant alignments: (Bits) Value
seq464 86.0 2e-12
seq45 84.2 6e-12
seq13 82.4 2e-11
>seq464
Length=182750
Score = 86.0 bits (94), Expect = 2e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 17760 AGCTTCCTATGATCTTAAAACGTCGAGATCTGATGTAAACTCGATTTTTGTTAAACGGGG 17819
|||||| |||||||| ||||||| ||||||||||| | |||||||||| | || ||
Sbjct 29060 AGCTTCTTATGATCTCAAAACGTTGAGATCTGATGAATACTCGATTTTCGAAAATTGGTC 29119
Query 17820 TAAAACCAATAACTTCCCGATTTTCGAAAATCTTCAAtttttttAGCGGGAAGGTAAAAA 17879
||| ||||||||||| ||||| ||||| ||||| |||||| ||| |||||
Sbjct 29120 AGAAATCAATAACTTCCTAATTTTAAAAAATTAGTGGTTTTTATAGCGGAAAGTCAAAAA 29179
>seq45
Length=1538373
Score = 84.2 bits (92), Expect = 6e-12
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 17760 AGCTTCCTATGATCTTAAAACGTCGAGATCTGATGTAAACTCGATTTTTGTTAAACGGGG 17819
||||||||||||||| |||||||| |||||||||| | | |||||||| | || |||
Sbjct 1023889 AGCTTCCTATGATCTCAAAACGTCAAGATCTGATGAATATTCGATTTTGGAAAATCGGCC 1023948
Query 17820 TAAAACCAATAACTTCCCGATTTTCGAAAAT 17850
| ||| |||| | ||||| ||||| |||||
Sbjct 1023949 TGAAATCAATCAATTCCCAATTTTGAAAAAT 1023979
>seq13
Length=2375419
Score = 82.4 bits (90), Expect = 2e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 17761 GCTTCCTATGATCTTAAAACGTCGAGATCTGATGTAAACTCGATTTTTGTTAAACGGGGT 17820
||||||||||| || ||||||||||||||| ||| | | | |||||| || || ||| |
Sbjct 572382 GCTTCCTATGAACTCAAAACGTCGAGATCTAATGAATATTTGATTTTCGTAAATCGGCCT 572441
Query 17821 AAAACCAATAACTTCCCGATTTTCGAAAAT 17850
||| ||||||||||| ||||| |||||
Sbjct 572442 GAAATCAATAACTTCCTAATTTTGAAAAAT 572471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132905705619960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |