Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq296 93.3 7e-14 >seq296 Length=775295 Score = 93.3 bits (102), Expect = 7e-14 Identities = 121/160 (76%), Gaps = 8/160 (5%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||||||||| |||||||||||| ||||||||| || || ||||| || || | || || Sbjct 226466 TGGTATTCTTTTCAATCACGAAAGTCCAAGAAGGGGAGAAACATTCGTTACCAGGAAAAT 226407 Query 194006 TA-CACA-AGGTTTATCTAAGATCTCTGTTGGATT-ACAGAAGAT-TCTTTATCTTGGTA 194061 | || | ||||| ||||| || | | || || ||||| || || | ||| |||| Sbjct 226406 AACCAGAGAGGTT--TCTAAAATACATTTAGGTTTGTCAGAAAATGTCGT--TCTGGGTA 226351 Query 194062 ATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTA 194101 |||| || |||| || ||||||||||| ||||||||||| Sbjct 226350 ATCTCGATTCTAAAAGAGATTGGGGACATGCAAAGGATTA 226311 Score = 84.2 bits (92), Expect = 4e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698 |||| |||| || |||||| | | ||| ||||| |||||||||||||| ||||| || Sbjct 38608 AACCCACTGAAATTTATAATTTAGCTGCACAAAGCCATGTTAAAGTTTCTTTTGACTTGA 38549 Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758 |||||||| | | ||||| ||| | || || || ||| | | || || | | | Sbjct 38548 GTGAGTATACAGCAGAAGTTGACGCTATCGGCACACTCAGATTGTTGGATGCTATCAGAA 38489 Query 193759 TGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTG 193818 | ||| |||| || | || | ||||| |||||||| || |||| ||| Sbjct 38488 CATGTGGATTGGAAAAGCAGGTAAAATTTTATCAAGCATCTACTTCAGAGTTGTACGGTA 38429 Query 193819 GTGTTCTAGGCACT-CCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 || | ||| | | |||| |||||||| ||||| ||| |||| | || ||||||||| Sbjct 38428 AAGTAC-AGGAAATACCACAGTCAGAAACTACACCGTTTTATCCCAGGTCACCTTATGGT 38370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807514943373280