Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq310 511 6e-140 seq12 320 2e-82 seq104 82.4 1e-10 >seq310 Length=366558 Score = 511 bits (566), Expect = 6e-140 Identities = 1235/1856 (67%), Gaps = 29/1856 (2%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||| || | || ||| ||||| || ||||| | || ||||||| |||||| Sbjct 100539 GCAGGTTTTGTTCTTAAATAATACATACCAGTTTTCAAGCCCTTCTTCCATCCATAAAAA 100598 Query 62076 TGCATACTCGTTAGT--TTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGAC 62133 || || || | | ||| ||| | || | | | ||||| ||||| | ||| || | Sbjct 100599 TGAATGGACGACATTACTTG--ATAGTTTGGCTTTTCAATATGAATATTTAAAGACTGGC 100656 Query 62134 TTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTT 62193 | || || || |||||||| | ||||| ||||| |||| || || |||| ||||| Sbjct 100657 TCTGGTCAATAAAGGCTCCACGATCTGCCGCCATGTTTAAAATTACTTTCTGTGAAATTT 100716 Query 62194 CCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGG 62250 |||| | ||||||||| | || ||||| || |||| || |||| ||||| | Sbjct 100717 CCCACACAGTTTTATATATCTTTTTCATATCATCGGGAATTCCTGGAATATTTTGAATTG 100776 Query 62251 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 | |||| || || | || | || || ||| | |||| ||| | | | ||| || | Sbjct 100777 AGCCACAATTGGCAAGAACCTGGTTTTTCATCACGTCATCCCACAGTCCTAACTCAGTCA 100836 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 || ||||||| | ||| | || || || |||||||||||| || || | | || | Sbjct 100837 AATCTCTAAGCAAATGATGGTTGACAACGAAAAATTCTCCAGATAAAACGCGTCTTGTAT 100896 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 | | ||| || || ||||| || || |||||||| ||||||||||| || ||||| | Sbjct 100897 ATAGATTCGAAGTGTATGGTTCTACAGATTCATTATTACCCAAAATTTGGGCTGTTGAAG 100956 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62490 | || ||||| || || | | ||| |||||||| |||||| | ||||| ||| Sbjct 100957 CGGTAGGCATTGGGGCAAGAAGTAATGAATTTCTAATACCGTACTTAGCAATTTTCGCTT 101016 Query 62491 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAA 62550 | | || |||||| ||| | || | || |||| || Sbjct 101017 TCAAAGCACCCCAATCCCACAAGTCTGTGGGAGTTTTATTCCACATATCATACTGTAAAA 101076 Query 62551 TACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 62609 | || || || | | || | ||| |||| || || || || || ||||| || | | Sbjct 101077 TCCCCTTGCTTACAGGACTA-CCTTCATAAGTGGAATAAGGACCATCTTTCTCTGCGATT 101135 Query 62610 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 62669 ||||| || || || | |||||||||||| | |||||||| || | | ||| || | Sbjct 101136 TCACAGCTTGCTTCAAGTGCACCGTAATACAAAGTTTCGAAAATTTGTTGATTAAGTTTC 101195 Query 62670 TGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTG 62728 ||||| |||| ||| | | || ||| | |||||| || || ||||| ||||| Sbjct 101196 GCAGCTTCAGGGCTGTCATAAGC-TATACGAAGTAAAATAAAAGCATCGGCTAAACCTTG 101254 Query 62729 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62788 ||||| || || || ||||| || ||| ||| ||| ||| || ||||| | ||||| Sbjct 101255 TACACCGATTCCAATCGGTCTGTGCCTCACATTTGAGGTTTTGGCCTCTGGTACGGGATA 101314 Query 62789 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 62848 |||||||| || |||||||| || || ||| | || |||||| | || || | Sbjct 101315 ATAATTAACGTCGATAATTTTGTTTAGGTTTTTCGTAACAACTTTGGTGATTTCTTTTAA 101374 Query 62849 TTTGAGAAAATCAAA---TCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGATGC 62902 || |||||| | | | ||| |||||||||| |||| |||| ||||| Sbjct 101375 CTTCTTAAAATCGTAGGATTTTCTATCGGGCGTTACAAACATATTCACTGCAAGCGATGC 101434 Query 62903 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 62962 || |||||| || || || || | || | ||||| | || || ||||| | ||| Sbjct 101435 CAAATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAACAATTTCTGTGCATAAATT 101494 Query 62963 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63022 || | | || |||||||| ||||||||||| || ||| |||| || ||||| ||||| Sbjct 101495 GCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTCTGTTGCATGCATCTTTATA 101554 Query 63023 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63082 || ||||| ||||| |||||||| | ||||| | || || || | ||| | | Sbjct 101555 TAGCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTATAGCATGCCACAATTTCTG 101614 Query 63083 AGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 63142 ||| || | ||| ||||| | | |||| ||| || | |||||| |||| || Sbjct 101615 AGCAGGTACTTGAGAAATGTATTTACCTTCTGCTTCATACTTTTCATACAACTGTTCAAA 101674 Query 63143 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 63202 || ||||||||| || || | ||| ||||||| || |||||||||| ||||| | Sbjct 101675 CTTTTCTCCCCAATTATCGTAAAGTCCGGGACATTGATGAGGACACATCAGTGACCAGTG 101734 Query 63203 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63262 || | | | |||| ||||||||| | ||| || ||||| || || ||| | ||| Sbjct 101735 CCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGTATCCATAGGGCATAAAACAAATC 101794 Query 63263 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63322 ||| | ||| || || ||||||||||| ||||| | || | || | | || || Sbjct 101795 TCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTCAAATTTAAAAATTCAAATATGTC 101854 Query 63323 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63382 | |||||| ||||| | || || || | | | ||||| | ||||| ||||| ||||| Sbjct 101855 TGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCAGGTCTCTTGTTACCTCCTTGATC 101914 Query 63383 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63442 || ||||| || |||||| |||| | | ||| |||| | |||||| || | || Sbjct 101915 TACATATCTGGCTAAATTATTAAAAACACGAAGCATAGGAACTAAACCGTTCGAAGTGCC 101974 Query 63443 ATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 63502 ||||| || | || | || || | ||||| ||||| | || || | || Sbjct 101975 GTTGGTGCCTGCTATGAAACTACCTTTAGCACGTATATTGTGCACGCTTATGCCCAAACC 102034 Query 63503 CCCTGCCATTTTAGAGATTAATGCGCATCGT--TTTAACGTGTCATAGATACCCTCTATG 63560 |||||| |||||| || | || | | || | ||| | | | | || || || ||| Sbjct 102035 ACCTGCCGATTTAGAAATGAGAGCAC-TTGTAGTCAAACAT-TTACAAATGCCTTCAATG 102092 Query 63561 CTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT--TCCC 63617 |||||||| || || || || ||||| || | | ||| | || || |||| Sbjct 102093 CTATCATCAGGCATTGCTACCAAG-AAACACGATGAAA---GCTGAGGTCTTGTGGTCCC 102148 Query 63618 -GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 || || | |||||| || || || || || || || | || ||||||||| Sbjct 102149 AGCTGAGAACAGAGTAGGACTTGCATGTGTGAAAAATCGATCTGACATTAAATTGTACGT 102208 Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 || || || | |||||||| | ||||| || || || || ||||| | |||||| Sbjct 102209 TTCTATTGCGGCATCTATATCTTTATAGTGAATGCCCACAGCAACTCGCATAAGCATGTG 102268 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||||||||||| ||||| || ||| | |||||| | || || ||| |||||||| Sbjct 102269 TTGAGGTCTTTCGACGATTTTTCCGTTGACTTTCAAGAGATACGAACGTTCTAAAGTTTT 102328 Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852 |||||||||||| ||||| ||||| || || || || | ||||| || || |||| Sbjct 102329 AAAACCAAAATAATTGTAGGAAAAATCGCGATCATAGACGATAACGGAATTCAGTT 102384 >seq12 Length=2314596 Score = 320 bits (354), Expect = 2e-82 Identities = 613/899 (68%), Gaps = 7/899 (1%) Strand=Plus/Minus Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 ||||| || ||||| |||||||| || ||||| || ||||| || || || || Sbjct 282096 ACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTG 282037 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 || || || | ||| || ||||||||||| ||||||||||||| || | | | ||||| Sbjct 282036 GAAATTTTGTTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAAC 281977 Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183 || | | | || || || ||||| ||||| ||||| || |||||||| Sbjct 281976 TCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATA 281917 Query 33184 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 33243 || || || | || || | ||| |||| | |||||| |||||||| || ||||| Sbjct 281916 CCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCG 281857 Query 33244 GTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATG--CAATAAATGTTTAAACATCA 33301 || ||| | | || |||| ||| || ||||| | | |||||| | Sbjct 281856 CGAATTATATCTGTTACTCGCTCTTTTGATGGTTTTTGAACAATATAAGA--AAACATTA 281799 Query 33302 AACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGA 33361 |||| || ||||| || |||| ||| || || | | ||| || || || ||||| || | Sbjct 281798 AACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCA 281739 Query 33362 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGA 33421 |||| ||||| || || || || || |||||||| || | ||| || ||| ||||||| Sbjct 281738 GTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGA 281679 Query 33422 AGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA-TGT 33480 | |||||||| || || ||||| |||| || || ||| | || | | | || Sbjct 281678 AAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACTGC 281619 Query 33481 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| | |||||||||| |||||||| || ||||||||||| ||||| || |||| Sbjct 281618 TGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCAT 281559 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 | || ||| | | ||| || | || | |||||| || || | | |||||||| Sbjct 281558 TGAAAAGAAATTCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATACA 281499 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 |||| ||||| || ||||||||||| || || || || || || || | |||||| || | Sbjct 281498 TTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGTTA 281439 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||||||||| || |||| || | | |||||||| || ||||| ||| || | Sbjct 281438 CTTGTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCAG 281379 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 ||||||| || | ||||||| || |||| |||| || || | |||| ||| | Sbjct 281378 CAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCAGT 281319 Query 33779 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33838 | || ||||| | ||||||||||| |||||| || || || || || | | Sbjct 281318 GGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCCT 281259 Query 33839 TATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 | ||| | | ||| ||||| |||||| || || || || || || || |||||||| Sbjct 281258 TGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTCTTGGATTT 281200 >seq104 Length=1066031 Score = 82.4 bits (90), Expect = 1e-10 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 27850 GTATCCGTAAAGTAATTTCCTGTCCAATTTGAGGTACCTATATACGCCGTTTTATCGGTT 27909 || || |||||||| | | | | ||||||||| || |||| ||| ||||| ||||||||| Sbjct 975 GTGTCTGTAAAGTAGTCTGCCGACCAATTTGAAGTGCCTACATAAGCCGTATTATCGGTT 1034 Query 27910 ACCATATATTTGGCATGGTTTACCCTAGAATACGGAAT 27947 ||||||||||| || || || |||| |||||| || Sbjct 1035 ACCATATATTTATTGTGATTCACTCTAGCATACGGTAT 1072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622916146082080