Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq169 194 4e-44
seq12 192 2e-43
seq310 129 2e-24
>seq169
Length=813669
Score = 194 bits (214), Expect = 4e-44
Identities = 357/518 (69%), Gaps = 4/518 (1%)
Strand=Plus/Minus
Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373
|||||| | || |||||||| | || ||||| ||| | || |||||| | |||||
Sbjct 304801 TTTTCCTTTGCTTACAACAAAAAGGGTATTTTGGAGAGGAGTGGTTGAAGAATTACTGTG 304742
Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433
||||||| || || |||||| |||| || || |||| ||| |||| | ||||||||
Sbjct 304741 GTTTATTAAGGGTAGCACAAATTCAAAAGAGCTAGCAGAGAAAGATGTTCACATTTGGGA 304682
Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGA 111493
| |||| | || || || ||||||||| | ||| || || | |||||||| ||
Sbjct 304681 TCCAAATAGTTCTCGAGAGTTTCTAGATGGTTTAGGTTTTAAAGAAAGGGAAGAAGGCGA 304622
Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553
| | ||||| || || ||||| || ||| | |||||||| || || || | | |||||
Sbjct 304621 TTTGGGACCTGTCTATGGATTCCAGTGGAGACACTTTGGGGCTGAATATAGAGGAATGCA 304562
Query 111554 CGACTCA-TATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGA 111612
| || | || | | || | ||| ||| || | ||||| || | | ||||||
Sbjct 304561 TG-CTGACTACAGTGGTGAAGGCATTGACCAACTAAATAATGTAATAAAAGACATTAAGG 304503
Query 111613 ACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAA 111672
|||| |||| |||| | ||||||||| |||| |||||||| | || | ||
Sbjct 304502 ACAATCCAAACAGTCGTAGGATTATTATGTGTGCCTGGAACCCTATTGACATACCTTTAA 304443
Query 111673 TGGCACTTCCACCATGTCA-TCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCA 111731
|||| || || || || || | |||| ||||| | ||| | || |||||
Sbjct 304442 TGGCTCTACCTCCTTGCCACTGCCTTGTG-CAGTTCTTTGTTGCAAATGGAGAACTTTCC 304384
Query 111732 TGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGT 111791
||| | ||||||| |||| |||||||| |||||||| || || || |||||||| |||
Sbjct 304383 TGCTTACTGTATCAAAGATCAGCTGATATGGGTCTTGGAGTGCCATTCAATATTGCCAGT 304324
Query 111792 TACGCACTACTTACTTGCTTAATCGCTCATTTTACAAA 111829
|| ||| |||| ||| | || |||||| | |||||
Sbjct 304323 TATGCATTACTGACTGTTATGATAGCTCATATAACAAA 304286
>seq12
Length=2314596
Score = 192 bits (212), Expect = 2e-43
Identities = 349/508 (69%), Gaps = 6/508 (1%)
Strand=Plus/Plus
Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT--GAACGTT-CATTCGCGG 22489
||||||| ||||| |||||||| || | ||||| | || | ||| | ||||| | |
Sbjct 281583 TTAAGAAGAAGGCTGATTGGGCTCTTCATTGGATCAGCAGTAAGAATGCAACATTCCCAG 281642
Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549
|||| || |||||||||| | || ||||| ||||||||||| ||| ||| ||| |
Sbjct 281643 AACGAGTTGTTGCATTTGCAGCTGTGGAAGGAATTTTCTTTTCAGGAAGTTTTGCTGCTA 281702
Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609
|||||||||| || ||||| | ||||||| || || || ||||| |||||| | |||
Sbjct 281703 TCTTTTGGCTCAAGAAACGGGGTCTTATGCCAGGACTGACATTTTCTAATGAGCTTATTT 281762
Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTC 22669
|| ||||| ||| | ||| |||||||| ||| | | | | | |||| |||
Sbjct 281763 CTCGCGATGAAGGTTTGCATTGTGATTTTGCTTGTTTAATGTTT---TCTTATATTGTTC 281819
Query 22670 ATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTC 22729
| |||| || | || ||| ||||| ||| |||||||| || ||||||
Sbjct 281820 AAAAACCATCAAAAGAGCGAGTAACAGATATAATTCGCGATGCAGTTAAAATTGAACAGG 281879
Query 22730 TATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTA 22789
|||| | || || || || ||||| || |||||||| ||| | || ||| |
Sbjct 281880 AATTTTTAACTGATGCTTTGCCTGTAAGCCTAATTGGTATGAATTGCAAACTGATGTCTC 281939
Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849
||||| ||||||| || || ||||| ||| | | |||| || ||| |||||
Sbjct 281940 AGTATATCGAATTTGTAGCTGACCGTCTTTTAGTAGAGTTGGGTTGTGATAAGATTTATA 281999
Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909
| || ||||| ||||| | ||| | ||||| ||| || ||||| |||||||
Sbjct 282000 ATGTTAAGAATCCGTTTGACTTTATGAACAAAATTTCCACTGATGGCAAGACAAATTTCT 282059
Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAA 22937
| ||||| | ||| |||||||| |||||
Sbjct 282060 TTGAAAAGAAAGTAGGTGAATATCAAAA 282087
>seq310
Length=366558
Score = 129 bits (142), Expect = 2e-24
Identities = 842/1343 (63%), Gaps = 26/1343 (2%)
Strand=Plus/Minus
Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819
||||| || | ||||| ||||||||||| ||| | ||| || || || || || ||
Sbjct 101968 TCGAACGGTTTAGTTCCTATGCTTCGTGTTTTTAATAATTTAGCCAGATATGTAGATCAA 101909
Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879
|| || ||| | || || |||||||| ||||| || || ||||| || ||
Sbjct 101908 GGAGGTAACAAGAGACCTGGTGCTTTTGCTATCTATCTTGAACCATGGCATGCAGACATA 101849
Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939
||||| ||| | | | ||||| || |||||||| || || | ||| | ||| ||
Sbjct 101848 TTTGAATTTTTAAATTTGAAAAAAAATACAGGAAAAGAAGAGATGAGAGCAAGAGATTTG 101789
Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999
|| ||||| || ||| | | || |||||||| | || || | | | | |||
Sbjct 101788 TTTTATGCCCTATGGATACCAGATTTGTTTATGAAAAGAGTTGAACAAAATGGGCACTGG 101729
Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059
||||| | || || || ||||||| || |||| |||| ||||| || | | ||
Sbjct 101728 TCACTGATGTGTCCTCATCAATGTCCCGGACTTTACGATAATTGGGGAGAAAAGTTTGAA 101669
Query 364060 GCTCTATACGAAAAGTATGAATC-GGAGGGAAAGGC---TCGTAAGACAATTCCCGCACA 364115
| || |||||||||||| | | ||| ||| | || ||| | || || ||
Sbjct 101668 CAGTTGTATGAAAAGTATGAAGCAGAAGGTAAATACATTTCTCAAG----TACCTGCTCA 101613
Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175
||| | ||| ||| || || | ||| || | || || || || || | ||| | ||
Sbjct 101612 GAAATTGTGGCATGCTATAATTGTTTCTCAAGTCGAAACTGGGACTCCTTTCATGCTATA 101553
Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCA 364234
|||||| | |||||| | || ||| || || || | || |||||| || || ||||
Sbjct 101552 TAAAGATGCATGCAACAGAAAAAGCAATCAACAAAACTTAGGAACAATT-AGAAGCAGCA 101494
Query 364235 ACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTG 364294
| |||| || || ||| ||||||| || | || ||||| ||| || ||||| | |
Sbjct 101493 ATTTATGCACAGAAATTGTTGAATATACTTCCCCTGACGAAGTTGCGGTCTGTAATTTGG 101434
Query 364295 CGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTA---CTTTTGACCACCAGCATC 364348
| ||| | || | |||||||| ||| | | | | || || |
Sbjct 101433 CATCGCTTGCAGTGAATATGTTTGTAACGCCCGATAGAAAATCCTACGATTTTAAGAAGT 101374
Query 364349 TTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATT 364408
| | || | ||| | || ||| || || |||| |||||||| |||||||
Sbjct 101373 TAAAAGAAATCACCAAAGTTGTTACGAAAAACCTAAACAAAATTATCGACGTTAATTATT 101314
Query 364409 ATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTAC 364468
|||| | || || ||| | || ||| || | || | |||||||| | |||||||
Sbjct 101313 ATCCCGTACCAGAGGCCAAAACCTCAAATGTGAGGCACAGACCGATTGGAATCGGTGTAC 101254
Query 364469 AGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTG 364528
| || | || || | |||||| | || || || | ||| ||||| |||
Sbjct 101253 AAGGTTTAGCCGATGCTTTTATTTTACTTCGTATAGCTTATGACAGCCCTGAAGCTGCGA 101194
Query 364529 TTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATT 364588
|| ||| | | || || ||||| |||||| | ||| | || |||||
Sbjct 101193 AACTTAATCAACAAATTTTCGAAACTTTGTATTACGGTGCACTTGAAGCAAGCTGTGAAA 101134
Query 364589 TGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAAT 364648
| ||| | | | || || || |||||||| || ||| | |||| | |
Sbjct 101133 TCGCAGAGAAAGATGGTCCTTATTCCACTTATGAAGGTAGTCCTGTAAGCAAGGGGATTT 101074
Query 364649 TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTT 364708
| |||| |||| | |||||| || || | | | ||| | |||| | | |
Sbjct 101073 TACAGTATGATATGTGGAATAAAACTCCCACAGACTTGTGGGATTGGGGTGCTTTGAAAG 101014
Query 364709 CCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTT 364768
| || || ||| | |||| | | || || | || || || ||||| || ||||
Sbjct 101013 CGAAAATTGCTAAGTACGGTATTAGAAATTCATTACTTCTTGCCCCAATGCCTACCGCTT 100954
Query 364769 CTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATT 364828
| || || || || | || || || || | | ||||| | || ||||| |||
Sbjct 100953 CAACAGCCCAAATTTTGGGTAATAATGAATCTGTAGAACCATACACTTCGAATCTATATA 100894
Query 364829 CACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTT 364888
|| | || ||| | || ||||||||| || || || | | | | | ||| |
Sbjct 100893 CAAGACGCGTTTTATCTGGAGAATTTTTCGTTGTCAACCATCATTTGCTTAGAGATTTGA 100834
Query 364889 CCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTG 364948
| || || ||||||| |||| ||||| ||| | | | ||| | ||| ||
Sbjct 100833 CTGAGTTAGGACTGTGGGATGACGTGATGAAAAACCAGGTTCTTGCCAATTGTGGCTCAA 100774
Query 364949 TGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAA 365008
| || || ||||||||| |||| || ||| |||| || || ||||| || |||||||
Sbjct 100773 TTCAAAATATTCCAGGAATTCCCGATGATATGAAAAAGATATATAAAACTGTGTGGGAAA 100714
Query 365009 TTTC-CATGCGAACTCTCATT---GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAG 365064
|||| || ||| | ||| | |||||||| ||||| || || ||||| |||
Sbjct 100713 TTTCACA---GAA-AGTAATTTTAAACATGGCGGCAGATCGTGGAGCCTTTATTGACCAG 100658
Query 365065 AGCCAGTCGTTTAACGTATTCAT 365087
|||||||| ||||| |||||||
Sbjct 100657 AGCCAGTC-TTTAA-ATATTCAT 100637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303287003518616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |