Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq169 194 4e-44 seq12 192 2e-43 seq310 129 2e-24 >seq169 Length=813669 Score = 194 bits (214), Expect = 4e-44 Identities = 357/518 (69%), Gaps = 4/518 (1%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 |||||| | || |||||||| | || ||||| ||| | || |||||| | ||||| Sbjct 304801 TTTTCCTTTGCTTACAACAAAAAGGGTATTTTGGAGAGGAGTGGTTGAAGAATTACTGTG 304742 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 ||||||| || || |||||| |||| || || |||| ||| |||| | |||||||| Sbjct 304741 GTTTATTAAGGGTAGCACAAATTCAAAAGAGCTAGCAGAGAAAGATGTTCACATTTGGGA 304682 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGA 111493 | |||| | || || || ||||||||| | ||| || || | |||||||| || Sbjct 304681 TCCAAATAGTTCTCGAGAGTTTCTAGATGGTTTAGGTTTTAAAGAAAGGGAAGAAGGCGA 304622 Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 | | ||||| || || ||||| || ||| | |||||||| || || || | | ||||| Sbjct 304621 TTTGGGACCTGTCTATGGATTCCAGTGGAGACACTTTGGGGCTGAATATAGAGGAATGCA 304562 Query 111554 CGACTCA-TATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGA 111612 | || | || | | || | ||| ||| || | ||||| || | | |||||| Sbjct 304561 TG-CTGACTACAGTGGTGAAGGCATTGACCAACTAAATAATGTAATAAAAGACATTAAGG 304503 Query 111613 ACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAA 111672 |||| |||| |||| | ||||||||| |||| |||||||| | || | || Sbjct 304502 ACAATCCAAACAGTCGTAGGATTATTATGTGTGCCTGGAACCCTATTGACATACCTTTAA 304443 Query 111673 TGGCACTTCCACCATGTCA-TCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCA 111731 |||| || || || || || | |||| ||||| | ||| | || ||||| Sbjct 304442 TGGCTCTACCTCCTTGCCACTGCCTTGTG-CAGTTCTTTGTTGCAAATGGAGAACTTTCC 304384 Query 111732 TGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGT 111791 ||| | ||||||| |||| |||||||| |||||||| || || || |||||||| ||| Sbjct 304383 TGCTTACTGTATCAAAGATCAGCTGATATGGGTCTTGGAGTGCCATTCAATATTGCCAGT 304324 Query 111792 TACGCACTACTTACTTGCTTAATCGCTCATTTTACAAA 111829 || ||| |||| ||| | || |||||| | ||||| Sbjct 304323 TATGCATTACTGACTGTTATGATAGCTCATATAACAAA 304286 >seq12 Length=2314596 Score = 192 bits (212), Expect = 2e-43 Identities = 349/508 (69%), Gaps = 6/508 (1%) Strand=Plus/Plus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT--GAACGTT-CATTCGCGG 22489 ||||||| ||||| |||||||| || | ||||| | || | ||| | ||||| | | Sbjct 281583 TTAAGAAGAAGGCTGATTGGGCTCTTCATTGGATCAGCAGTAAGAATGCAACATTCCCAG 281642 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 |||| || |||||||||| | || ||||| ||||||||||| ||| ||| ||| | Sbjct 281643 AACGAGTTGTTGCATTTGCAGCTGTGGAAGGAATTTTCTTTTCAGGAAGTTTTGCTGCTA 281702 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 |||||||||| || ||||| | ||||||| || || || ||||| |||||| | ||| Sbjct 281703 TCTTTTGGCTCAAGAAACGGGGTCTTATGCCAGGACTGACATTTTCTAATGAGCTTATTT 281762 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTC 22669 || ||||| ||| | ||| |||||||| ||| | | | | | |||| ||| Sbjct 281763 CTCGCGATGAAGGTTTGCATTGTGATTTTGCTTGTTTAATGTTT---TCTTATATTGTTC 281819 Query 22670 ATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTC 22729 | |||| || | || ||| ||||| ||| |||||||| || |||||| Sbjct 281820 AAAAACCATCAAAAGAGCGAGTAACAGATATAATTCGCGATGCAGTTAAAATTGAACAGG 281879 Query 22730 TATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTA 22789 |||| | || || || || ||||| || |||||||| ||| | || ||| | Sbjct 281880 AATTTTTAACTGATGCTTTGCCTGTAAGCCTAATTGGTATGAATTGCAAACTGATGTCTC 281939 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 ||||| ||||||| || || ||||| ||| | | |||| || ||| ||||| Sbjct 281940 AGTATATCGAATTTGTAGCTGACCGTCTTTTAGTAGAGTTGGGTTGTGATAAGATTTATA 281999 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 | || ||||| ||||| | ||| | ||||| ||| || ||||| ||||||| Sbjct 282000 ATGTTAAGAATCCGTTTGACTTTATGAACAAAATTTCCACTGATGGCAAGACAAATTTCT 282059 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAA 22937 | ||||| | ||| |||||||| ||||| Sbjct 282060 TTGAAAAGAAAGTAGGTGAATATCAAAA 282087 >seq310 Length=366558 Score = 129 bits (142), Expect = 2e-24 Identities = 842/1343 (63%), Gaps = 26/1343 (2%) Strand=Plus/Minus Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819 ||||| || | ||||| ||||||||||| ||| | ||| || || || || || || Sbjct 101968 TCGAACGGTTTAGTTCCTATGCTTCGTGTTTTTAATAATTTAGCCAGATATGTAGATCAA 101909 Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || ||| | || || |||||||| ||||| || || ||||| || || Sbjct 101908 GGAGGTAACAAGAGACCTGGTGCTTTTGCTATCTATCTTGAACCATGGCATGCAGACATA 101849 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 ||||| ||| | | | ||||| || |||||||| || || | ||| | ||| || Sbjct 101848 TTTGAATTTTTAAATTTGAAAAAAAATACAGGAAAAGAAGAGATGAGAGCAAGAGATTTG 101789 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 || ||||| || ||| | | || |||||||| | || || | | | | ||| Sbjct 101788 TTTTATGCCCTATGGATACCAGATTTGTTTATGAAAAGAGTTGAACAAAATGGGCACTGG 101729 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 ||||| | || || || ||||||| || |||| |||| ||||| || | | || Sbjct 101728 TCACTGATGTGTCCTCATCAATGTCCCGGACTTTACGATAATTGGGGAGAAAAGTTTGAA 101669 Query 364060 GCTCTATACGAAAAGTATGAATC-GGAGGGAAAGGC---TCGTAAGACAATTCCCGCACA 364115 | || |||||||||||| | | ||| ||| | || ||| | || || || Sbjct 101668 CAGTTGTATGAAAAGTATGAAGCAGAAGGTAAATACATTTCTCAAG----TACCTGCTCA 101613 Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175 ||| | ||| ||| || || | ||| || | || || || || || | ||| | || Sbjct 101612 GAAATTGTGGCATGCTATAATTGTTTCTCAAGTCGAAACTGGGACTCCTTTCATGCTATA 101553 Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCA 364234 |||||| | |||||| | || ||| || || || | || |||||| || || |||| Sbjct 101552 TAAAGATGCATGCAACAGAAAAAGCAATCAACAAAACTTAGGAACAATT-AGAAGCAGCA 101494 Query 364235 ACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTG 364294 | |||| || || ||| ||||||| || | || ||||| ||| || ||||| | | Sbjct 101493 ATTTATGCACAGAAATTGTTGAATATACTTCCCCTGACGAAGTTGCGGTCTGTAATTTGG 101434 Query 364295 CGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTA---CTTTTGACCACCAGCATC 364348 | ||| | || | |||||||| ||| | | | | || || | Sbjct 101433 CATCGCTTGCAGTGAATATGTTTGTAACGCCCGATAGAAAATCCTACGATTTTAAGAAGT 101374 Query 364349 TTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATT 364408 | | || | ||| | || ||| || || |||| |||||||| ||||||| Sbjct 101373 TAAAAGAAATCACCAAAGTTGTTACGAAAAACCTAAACAAAATTATCGACGTTAATTATT 101314 Query 364409 ATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTAC 364468 |||| | || || ||| | || ||| || | || | |||||||| | ||||||| Sbjct 101313 ATCCCGTACCAGAGGCCAAAACCTCAAATGTGAGGCACAGACCGATTGGAATCGGTGTAC 101254 Query 364469 AGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTG 364528 | || | || || | |||||| | || || || | ||| ||||| ||| Sbjct 101253 AAGGTTTAGCCGATGCTTTTATTTTACTTCGTATAGCTTATGACAGCCCTGAAGCTGCGA 101194 Query 364529 TTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATT 364588 || ||| | | || || ||||| |||||| | ||| | || ||||| Sbjct 101193 AACTTAATCAACAAATTTTCGAAACTTTGTATTACGGTGCACTTGAAGCAAGCTGTGAAA 101134 Query 364589 TGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAAT 364648 | ||| | | | || || || |||||||| || ||| | |||| | | Sbjct 101133 TCGCAGAGAAAGATGGTCCTTATTCCACTTATGAAGGTAGTCCTGTAAGCAAGGGGATTT 101074 Query 364649 TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTT 364708 | |||| |||| | |||||| || || | | | ||| | |||| | | | Sbjct 101073 TACAGTATGATATGTGGAATAAAACTCCCACAGACTTGTGGGATTGGGGTGCTTTGAAAG 101014 Query 364709 CCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTT 364768 | || || ||| | |||| | | || || | || || || ||||| || |||| Sbjct 101013 CGAAAATTGCTAAGTACGGTATTAGAAATTCATTACTTCTTGCCCCAATGCCTACCGCTT 100954 Query 364769 CTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATT 364828 | || || || || | || || || || | | ||||| | || ||||| ||| Sbjct 100953 CAACAGCCCAAATTTTGGGTAATAATGAATCTGTAGAACCATACACTTCGAATCTATATA 100894 Query 364829 CACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTT 364888 || | || ||| | || ||||||||| || || || | | | | | ||| | Sbjct 100893 CAAGACGCGTTTTATCTGGAGAATTTTTCGTTGTCAACCATCATTTGCTTAGAGATTTGA 100834 Query 364889 CCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTG 364948 | || || ||||||| |||| ||||| ||| | | | ||| | ||| || Sbjct 100833 CTGAGTTAGGACTGTGGGATGACGTGATGAAAAACCAGGTTCTTGCCAATTGTGGCTCAA 100774 Query 364949 TGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAA 365008 | || || ||||||||| |||| || ||| |||| || || ||||| || ||||||| Sbjct 100773 TTCAAAATATTCCAGGAATTCCCGATGATATGAAAAAGATATATAAAACTGTGTGGGAAA 100714 Query 365009 TTTC-CATGCGAACTCTCATT---GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAG 365064 |||| || ||| | ||| | |||||||| ||||| || || ||||| ||| Sbjct 100713 TTTCACA---GAA-AGTAATTTTAAACATGGCGGCAGATCGTGGAGCCTTTATTGACCAG 100658 Query 365065 AGCCAGTCGTTTAACGTATTCAT 365087 |||||||| ||||| ||||||| Sbjct 100657 AGCCAGTC-TTTAA-ATATTCAT 100637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303287003518616