Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq428 145 5e-30
seq218 136 3e-27
seq180 132 3e-26
seq85 131 1e-25
seq42 122 6e-23
>seq428
Length=160056
Score = 145 bits (160), Expect = 5e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||| || ||||| | || |||||||| | || |||||||| || |||||||||||
Sbjct 129671 ACCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGA 129612
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| ||| | || || ||||||||||| ||||| ||||| |||||||| || | ||
Sbjct 129611 CAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGG 129552
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| |||||||| || |||||| ||||||||| | || ||||| ||| ||
Sbjct 129551 AATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGAC 129492
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || || |||||||| || || ||||||||||| |||||
Sbjct 129491 CTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444
>seq218
Length=661058
Score = 136 bits (150), Expect = 3e-27
Identities = 170/232 (73%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || |||||||| | | |||||||| |||||| || ||||||||||| ||||
Sbjct 356450 CATT-CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAAT 356508
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| || | ||| | || || | ||||||||| ||||| |||| | || ||||| |
Sbjct 356509 CGGAGAGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTG 356568
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | |||||||||||| ||||||| || ||||||| | |||||| ||
Sbjct 356569 GTGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTT 356628
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||||| || || |||||||| || | ||| |||||||| || |||||
Sbjct 356629 CAACTTCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680
Score = 123 bits (136), Expect = 2e-23
Identities = 168/233 (72%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| |||||||| | ||| || |||||||| || || ||||| || ||||| |||||||
Sbjct 352150 CATT-CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAAT 352208
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
|||||||| | | || || |||||||| |||||||| || | ||||| || || |
Sbjct 352209 CAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTG 352268
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | |||||||||||| || || |||||| || | | || ||| ||
Sbjct 352269 GAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTT 352328
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| ||||| | ||| || ||||| || || || ||||| || || || ||||||
Sbjct 352329 CTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCATG 352381
Score = 102 bits (112), Expect = 5e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||| | | ||| |||||||| | || ||||| |||||||| ||||| |
Sbjct 355996 TACCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTG 356055
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | ||| | || || || ||||| |||||||| || || ||||||||||| | |
Sbjct 356056 AAAGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTG 356115
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| ||||| |||||| || || || | | ||||| || |
Sbjct 356116 GGATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTA 356175
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| | || ||||||||||| || || ||||| ||||| || |||||
Sbjct 356176 CTTCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||| | |||||| || ||||| ||||| || |||||||||||||| ||||
Sbjct 356224 TACCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAG 356283
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | || | || ||||| || || || ||||| ||||| |||||||| || | |
Sbjct 356284 AAAGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAG 356343
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| ||||| |||||| || || || | | ||||| ||||
Sbjct 356344 GAATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAA 356403
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||| || || || || || || | || || || || ||||||||
Sbjct 356404 CTTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452
Score = 95.1 bits (104), Expect = 8e-15
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| || | | ||| || |||||||| || || ||||| || ||||| ||||||||||
Sbjct 357233 TACCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAG 357292
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | | || || ||||| || || ||||| || | |||||||| || | |
Sbjct 357293 ACAATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAG 357352
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | |||||||||||| || || ||||||||| | | || ||| ||| |
Sbjct 357353 GAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTA 357412
Query 38269 CTTCTAATGTAATAGTTTTACCCGT 38293
|||| | ||| || |||||||| ||
Sbjct 357413 CTTCCAGTGTGATTGTTTTACCAGT 357437
>seq180
Length=1027250
Score = 132 bits (146), Expect = 3e-26
Identities = 164/223 (74%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294
|||| || || || |||||||| || || || || ||||| || ||| ||||||| || |
Sbjct 77537 AGGTGGAAGGAAAAGGAAACGGAATCAAGACGGTAATTGTAAATATGACTGAAGTTGCAA 77596
Query 6295 AGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTC 6354
| || | || | ||| |||| || || || ||||||||||| |||||| | || ||||
Sbjct 77597 AAGCTTTGGGTAGGCCTCCCACTTATCCCACAAAATATTTCGGATGCGAATTGGGTGCTC 77656
Query 6355 AGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC- 6413
| || || || ||| |||||| || |||||||| || || || || ||| | ||||
Sbjct 77657 AAACCCAATTCGATTTCAAAAATGAACGCTTCATTGTCAATGGTTCTCATGA---TGCCA 77713
Query 6414 --AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGT 6454
|| || || || ||| | || || ||||||||||||| |||
Sbjct 77714 TTAAACTTCAAGATTTATTGGATGGATTTATTCGCAAGTATGT 77756
>seq85
Length=903118
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 885140 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 885199
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 885200 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 885234
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 887161 CTCTTTTTTCAAAGTTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 887220
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 887221 GCCCGTATTTAGCCTT 887236
>seq42
Length=1310368
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||| | ||||| | ||||||||
Sbjct 1257711 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGAGAGAATCTCGT 1257770
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1257771 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1257805
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||| | ||||| | ||||| ||
Sbjct 1253813 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGTCACAGAGAATCTGGT 1253872
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1253873 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1253907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334930920310028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |