Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq428 145 5e-30 seq218 136 3e-27 seq180 132 3e-26 seq85 131 1e-25 seq42 122 6e-23 >seq428 Length=160056 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || ||||| | || |||||||| | || |||||||| || ||||||||||| Sbjct 129671 ACCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGA 129612 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| ||| | || || ||||||||||| ||||| ||||| |||||||| || | || Sbjct 129611 CAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGG 129552 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||| || |||||| ||||||||| | || ||||| ||| || Sbjct 129551 AATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGAC 129492 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || || |||||||| || || ||||||||||| ||||| Sbjct 129491 CTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq218 Length=661058 Score = 136 bits (150), Expect = 3e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| | | |||||||| |||||| || ||||||||||| |||| Sbjct 356450 CATT-CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAAT 356508 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| | || || | ||||||||| ||||| |||| | || ||||| | Sbjct 356509 CGGAGAGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTG 356568 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||||||| ||||||| || ||||||| | |||||| || Sbjct 356569 GTGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTT 356628 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || || |||||||| || | ||| |||||||| || ||||| Sbjct 356629 CAACTTCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 123 bits (136), Expect = 2e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| | ||| || |||||||| || || ||||| || ||||| ||||||| Sbjct 352150 CATT-CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAAT 352208 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| | | || || |||||||| |||||||| || | ||||| || || | Sbjct 352209 CAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTG 352268 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||||||| || || |||||| || | | || ||| || Sbjct 352269 GAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTT 352328 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||| | ||| || ||||| || || || ||||| || || || |||||| Sbjct 352329 CTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCATG 352381 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | | ||| |||||||| | || ||||| |||||||| ||||| | Sbjct 355996 TACCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTG 356055 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || || ||||| |||||||| || || ||||||||||| | | Sbjct 356056 AAAGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTG 356115 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| |||||| || || || | | ||||| || | Sbjct 356116 GGATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTA 356175 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || ||||||||||| || || ||||| ||||| || ||||| Sbjct 356176 CTTCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | |||||| || ||||| ||||| || |||||||||||||| |||| Sbjct 356224 TACCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAG 356283 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || ||||| || || || ||||| ||||| |||||||| || | | Sbjct 356284 AAAGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAG 356343 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| |||||| || || || | | ||||| |||| Sbjct 356344 GAATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAA 356403 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || || || || || || | || || || || |||||||| Sbjct 356404 CTTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||| || |||||||| || || ||||| || ||||| |||||||||| Sbjct 357233 TACCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAG 357292 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || || ||||| || || ||||| || | |||||||| || | | Sbjct 357293 ACAATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAG 357352 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || || ||||||||| | | || ||| ||| | Sbjct 357353 GAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTA 357412 Query 38269 CTTCTAATGTAATAGTTTTACCCGT 38293 |||| | ||| || |||||||| || Sbjct 357413 CTTCCAGTGTGATTGTTTTACCAGT 357437 >seq180 Length=1027250 Score = 132 bits (146), Expect = 3e-26 Identities = 164/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294 |||| || || || |||||||| || || || || ||||| || ||| ||||||| || | Sbjct 77537 AGGTGGAAGGAAAAGGAAACGGAATCAAGACGGTAATTGTAAATATGACTGAAGTTGCAA 77596 Query 6295 AGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTC 6354 | || | || | ||| |||| || || || ||||||||||| |||||| | || |||| Sbjct 77597 AAGCTTTGGGTAGGCCTCCCACTTATCCCACAAAATATTTCGGATGCGAATTGGGTGCTC 77656 Query 6355 AGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC- 6413 | || || || ||| |||||| || |||||||| || || || || ||| | |||| Sbjct 77657 AAACCCAATTCGATTTCAAAAATGAACGCTTCATTGTCAATGGTTCTCATGA---TGCCA 77713 Query 6414 --AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGT 6454 || || || || ||| | || || ||||||||||||| ||| Sbjct 77714 TTAAACTTCAAGATTTATTGGATGGATTTATTCGCAAGTATGT 77756 >seq85 Length=903118 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 885140 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 885199 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 885200 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 885234 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 887161 CTCTTTTTTCAAAGTTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 887220 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 887221 GCCCGTATTTAGCCTT 887236 >seq42 Length=1310368 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||| | ||||| | |||||||| Sbjct 1257711 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGAGAGAATCTCGT 1257770 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1257771 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1257805 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||| | ||||| | ||||| || Sbjct 1253813 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGTCACAGAGAATCTGGT 1253872 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1253873 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1253907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334930920310028