Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12 499 3e-136 seq81 125 8e-24 seq166 122 1e-22 >seq12 Length=2314596 Score = 499 bits (552), Expect = 3e-136 Identities = 667/922 (72%), Gaps = 4/922 (0%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| ||||| || ||||| |||||||||||||||||||| || || || || Sbjct 282087 TTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTGGAAATTTTG 282028 Query 92863 TTCACTA-GTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 |||| | || | |||||||| | |||||| ||| |||| |||||| ||| | Sbjct 282027 TTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAACTC-TACTAA 281969 Query 92921 AAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 || | |||||||||||||| || ||||||||||||| | |||||||| || | || Sbjct 281968 AAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATACCAATTAG 281909 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | |||||| | ||| || || || || || | || ||| ||| || || | || Sbjct 281908 GCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCGCGAATTAT 281849 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAA 93099 ||| |||||| |||| ||||||||| || | |||| ||||||| || ||||| Sbjct 281848 ATCTGTTACTCGCTCTTTTGATGGTTTTTGAACAATATAAGAAAACATTAAACAAGCAAA 281789 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 || ||| |||||||| || || || || | |||||| ||||| | ||||| | Sbjct 281788 ATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCAGTCCTGGCAT 281729 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 || || ||||||||||||||||| || | ||||||||| || ||||| || || ||||| Sbjct 281728 AAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGAAAATTCCTTC 281669 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 ||| ||||||||||| |||| ||||| | || |||| |||||||||||||| | Sbjct 281668 CACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACTGCTGATCCAATG 281609 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||||||| || || ||||||| |||||| | ||||| ||||| || || || | Sbjct 281608 AAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCATTGAAAAGAAA 281549 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 ||| ||| || | || ||| || || || || | | ||||||||| ||||| Sbjct 281548 TTCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATACATTTCTGAATG 281489 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || ||| || || ||||||||||| || || || || | ||| || || | || ||||| Sbjct 281488 GATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGTTACTTGTACTTC 281429 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 |||| ||||||||||| || |||||||| || || ||||| ||||| |||||||| || Sbjct 281428 TTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCAGCAAAAAAGGC 281369 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 | || ||| || ||||| | ||||||| | | ||||||||| | || || || Sbjct 281368 AAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCAGTGGGCAAGGTC 281309 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC 93639 || ||||| || |||||||| ||||| || || ||||| |||| |||||| | || Sbjct 281308 CTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCCTTGTACTTTTC 281249 Query 93640 CCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAA 93699 ||| |||||| |||||||||| |||||||| || || | | || || ||| | || || Sbjct 281248 CCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTCTTGGATTTTCTCTAAGCAA 281189 Query 93700 CGGCTCTAGTTGTGGGTCAAAC 93721 || |||| |||||| |||||| Sbjct 281188 TGGTTCTACTTGTGGATCAAAC 281167 >seq81 Length=1049489 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 541595 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 541654 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 541655 GTGGGTTCGAACCCCACACCTGACAA 541680 >seq166 Length=642833 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 45964 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 45905 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 45904 TGGGTTCGAACCCCACACCTGACA 45881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556833040489120