Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq12 499 3e-136
seq81 125 8e-24
seq166 122 1e-22
>seq12
Length=2314596
Score = 499 bits (552), Expect = 3e-136
Identities = 667/922 (72%), Gaps = 4/922 (0%)
Strand=Plus/Minus
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
||||| ||||| || ||||| |||||||||||||||||||| || || || ||
Sbjct 282087 TTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTGGAAATTTTG 282028
Query 92863 TTCACTA-GTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920
|||| | || | |||||||| | |||||| ||| |||| |||||| ||| |
Sbjct 282027 TTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAACTC-TACTAA 281969
Query 92921 AAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979
|| | |||||||||||||| || ||||||||||||| | |||||||| || | ||
Sbjct 281968 AAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATACCAATTAG 281909
Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039
| |||||| | ||| || || || || || | || ||| ||| || || | ||
Sbjct 281908 GCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCGCGAATTAT 281849
Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAA 93099
||| |||||| |||| ||||||||| || | |||| ||||||| || |||||
Sbjct 281848 ATCTGTTACTCGCTCTTTTGATGGTTTTTGAACAATATAAGAAAACATTAAACAAGCAAA 281789
Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159
|| ||| |||||||| || || || || | |||||| ||||| | ||||| |
Sbjct 281788 ATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCAGTCCTGGCAT 281729
Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219
|| || ||||||||||||||||| || | ||||||||| || ||||| || || |||||
Sbjct 281728 AAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGAAAATTCCTTC 281669
Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279
||| ||||||||||| |||| ||||| | || |||| |||||||||||||| |
Sbjct 281668 CACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACTGCTGATCCAATG 281609
Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339
| ||||||||| || || ||||||| |||||| | ||||| ||||| || || || |
Sbjct 281608 AAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCATTGAAAAGAAA 281549
Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
||| ||| || | || ||| || || || || | | ||||||||| |||||
Sbjct 281548 TTCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATACATTTCTGAATG 281489
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
|| ||| || || ||||||||||| || || || || | ||| || || | || |||||
Sbjct 281488 GATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGTTACTTGTACTTC 281429
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
|||| ||||||||||| || |||||||| || || ||||| ||||| |||||||| ||
Sbjct 281428 TTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCAGCAAAAAAGGC 281369
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579
| || ||| || ||||| | ||||||| | | ||||||||| | || || ||
Sbjct 281368 AAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCAGTGGGCAAGGTC 281309
Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC 93639
|| ||||| || |||||||| ||||| || || ||||| |||| |||||| | ||
Sbjct 281308 CTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCCTTGTACTTTTC 281249
Query 93640 CCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAA 93699
||| |||||| |||||||||| |||||||| || || | | || || ||| | || ||
Sbjct 281248 CCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTCTTGGATTTTCTCTAAGCAA 281189
Query 93700 CGGCTCTAGTTGTGGGTCAAAC 93721
|| |||| |||||| ||||||
Sbjct 281188 TGGTTCTACTTGTGGATCAAAC 281167
>seq81
Length=1049489
Score = 125 bits (138), Expect = 8e-24
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 541595 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 541654
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||
Sbjct 541655 GTGGGTTCGAACCCCACACCTGACAA 541680
>seq166
Length=642833
Score = 122 bits (134), Expect = 1e-22
Identities = 78/84 (93%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct 45964 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 45905
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||||||||||
Sbjct 45904 TGGGTTCGAACCCCACACCTGACA 45881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556833040489120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |