Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq218 170 2e-37 seq428 152 4e-32 seq25 141 8e-29 seq310 118 9e-22 >seq218 Length=661058 Score = 170 bits (188), Expect = 2e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| ||||| |||||||| | || |||||||| || | | Sbjct 356224 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATAACCCTTGAAGTAGAGCCATCT 356165 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| ||||||||||||||||| ||||| ||||| |||||| Sbjct 356164 GATACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAA 356105 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| |||||||| |||||||| || ||| || ||| | || ||||| || Sbjct 356104 CAACGTCTTATTTTTGCCGGGAAACAGTTGGAAGATGGACGAACCCTTTCAGATTATAAT 356045 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTTA 22457 ||||| || ||||| || ||||||| || ||| | | || || ||| | | | |||| Sbjct 356044 ATTCAGAAGGAATCTACATTACATTTGGTATTGAGGCTTCGAGGTGGTATGCAAATTTA 355986 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || ||||||| ||||| || | | Sbjct 356452 ATGCAGATCTTTGTAAAGACTCTTACTGGAAAGACCATCACTCTAGAAGTTGAGCCATCT 356393 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||||||||||||||| |||||||| || || ||| Sbjct 356392 GATACAATTGAAAACGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 356333 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || |||||||| ||| |||||| | || || ||||| Sbjct 356332 CAACGTCTAATTTTTGCTGGGAAGCAGTTAGAAGATGGTCGCACCCTTTCTGACTACAAT 356273 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||||||||| || | |||||||||||||| Sbjct 356272 ATTCAAAAAGAATCGACTCTGCATTTAGTTTTGCG 356238 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || ||||||||| ||||| | ||||| ||| | | Sbjct 356680 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCA 356621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||||||| || || |||||||| ||||| Sbjct 356620 GATACAATTGAGAATGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 356561 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||||| | || ||| || ||| |||||||||| || Sbjct 356560 CAGAGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAAT 356501 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||||||||| | ||||| || | ||||| | ||||| Sbjct 356500 ATTCAAAAAGAATCCACTCTCCATTTGGTACTCAGATTGAGAGGAGG 356454 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| || |||| |||||||| |||| ||||| || ||| | | Sbjct 356908 ATGCAGATTTTTGTTAAGACACTAACTGGTAAAACAATCACCCTTGAGGTAGAACCGTCT 356849 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||||||||||| || |||||||||||||| || ||| Sbjct 356848 GACACAATAGAGAACGTAAAGGCTAAAATTCAAGATAAAGAGGGTATTCCACCAGACCAA 356789 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| ||||| ||| | || ||| | || | || ||||||||| Sbjct 356788 CAAAGATTAATTTTTGCTGGCAAGCAGCTTGAAGATGGTAGGACATTGTCTGATTACAAC 356729 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||||||| | |||||||||||||| | | |||||| Sbjct 356728 ATCCAGAAAGAATCCACCCTTCATTTAGTTTTGCGTCTTAGAGGAGGT 356681 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| ||||| || ||||| |||| || ||||| ||| | | Sbjct 352380 ATGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA 352321 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||| || |||||||| || || || Sbjct 352320 GACACAATTGAAAACGTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAG 352261 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| || || ||| | || | || ||||||||| Sbjct 352260 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 352201 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| ||| | ||||| ||||| || Sbjct 352200 ATTCAGAAAGAGAGTACCCTCCATTTGGTTTTACG 352166 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288 ||||||| || |||| |||||||| |||| || ||||| ||| | | || || | | Sbjct 357451 TTGTTAAGACACTAACTGGTAAAACAATCACACTGGAAGTAGAACCGTCAGACACAATTG 357392 Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348 | || | || || || || ||||| || |||||||| || || ||||||||| | | Sbjct 357391 AAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAACGTTTGA 357332 Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408 | ||||| || || || || || ||| | || | || |||||||||||||| |||| Sbjct 357331 TTTTTGCTGGTAAGCAATTGGAAGATGGTAGAACATTGTCTGATTACAACATTCAGAAAG 357272 Query 22409 AATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| | ||||| ||||| || | || |||||| Sbjct 357271 AGAGTACCCTCCATTTGGTTTTACGTCTTCGTGGAGGT 357234 >seq428 Length=160056 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || |||||||| ||||| || ||||| | || || ||| | | Sbjct 129443 GATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTC 129502 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || | || |||||| ||||| || || || |||||||| || || Sbjct 129503 CGATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCA 129562 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||||||| || ||||| || ||||| || || ||| ||| || | || |||||||| Sbjct 129563 ACAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAA 129622 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| ||||| ||||| || | ||||| || || ||||| | |||||| Sbjct 129623 CATCCAAAAGGAATCGACATTGCATTTGGTCTTAAGATTGAGGGGAGGT 129671 >seq25 Length=1883024 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | ||||| ||||| |||| ||||| || ||| || | Sbjct 1512251 ATGCAAATTTTTGTGAAAACTCTTACCGGAAAAACAATCACCCTTGAGGTTGAACCCTCA 1512192 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || |||||||||||||| |||||||| || |||||| Sbjct 1512191 GACACAATCGAAAATGTAAAGGCGAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 1512132 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || || ||||| ||| ||| || | || || || ||| Sbjct 1512131 CAGAGGTTAATTTTCGCTGGTAAGCAATTAGAAGATGGCCGTACTCTTTCTGACTATAAC 1512072 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| |||||||| ||| |||| || || || || || | |||||| || Sbjct 1512071 ATTCAGAAAGAATCGACCTTACACTTGGTGTTACGTTTAAGAGGAGGTATT 1512021 >seq310 Length=366558 Score = 118 bits (130), Expect = 9e-22 Identities = 235/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 129511 TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCC 129570 ||||| |||||||| | ||| | || || |||| || | ||| || ||| ||| Sbjct 101241 TCGGCTAAACCTTGTACACCGATTCCAATCGGTCTGTGCCTCACATTTGAGGTTTTGGCC 101300 Query 129571 GACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTC 129630 | |||||| || || | ||| ||||||||||||| || || |||| ||| Sbjct 101301 TCTGGTACGGGATAATAATTAACGTCGATAATTTTGTTTAGGTTTTTCGTAACAACTTTG 101360 Query 129631 GTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCG--ACAAATTGAT 129688 || | | ||||||| | | ||||| ||| | |||| | || ||||| || Sbjct 101361 GTGATTTCTTTTAACTTCTTAAAATCGTAGGATTTTCTATCG--GGCGTTACAAACATAT 101418 Query 129689 TGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAA 129748 | || || ||| |||||||| ||||| ||| ||||| | | | || || |||| Sbjct 101419 TCACTGCAAGCGATGCCAAATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAACAA 101478 Query 129749 TTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGT 129808 |||| | ||| ||||| || || |||| || || || | | |||||| ||||| ||| Sbjct 101479 TTTCTGTGCATAAATTGCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTCTGT 101538 Query 129809 TGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 |||| |||||||| || | |||| | || || || ||||||||||| Sbjct 101539 TGCATGCATCTTTATATAGCATGAAAGGAGTCCCAGTTTCGACTTG 101584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419707599645220