Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq218 187 5e-42
seq25 165 2e-35
seq428 140 6e-28
>seq218
Length=661058
Score = 187 bits (206), Expect = 5e-42
Identities = 178/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | ||| ||||| || || || || ||||| ||||| |||||||| ||||| ||
Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| |||||| |||||||| | |||||| || || || || | |||||||||||| ||||||
Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || || |||||||| || ||||| ||| ||| || ||||| | | ||||||
Sbjct 356802 ATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACC 356861
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| | |||||| ||||| || || || ||||| || || |||||||||
Sbjct 356862 TCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCATT 356909
Score = 172 bits (190), Expect = 1e-37
Identities = 164/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311
|||||| || || ||||| |||||||| || |||||||||||||| || | ||||||||
Sbjct 356471 TACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACCATCTTC 356530
Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371
| || || || || || || | || || || || |||||||||||||| ||||||||
Sbjct 356531 CAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTG 356590
Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431
||| ||||| || || ||| || || |||| || ||| ||||| || ||||| |||||
Sbjct 356591 AATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGATCGTTTT 356650
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| ||||||||||| ||||| || |||||
Sbjct 356651 ACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| | ||||||||| |||| || || || || || || |||||||| ||
Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| ||||| |||||||| || || || | |||||| || |||||
Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||||||||| || || |||||| || || || || | || ||||||
Sbjct 356118 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACT 356177
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| || ||||| || || | || |||||||| || |||||
Sbjct 356178 TCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| ||||| || || || || || || |||||||| || || || || || || || |
Sbjct 356235 AGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGA 356294
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||||||||||||||| || || || || | ||||||||| || ||||| ||||||
Sbjct 356295 CCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCTTCC 356354
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||||||||| || || || ||| || || || || | || || ||||| | |||
Sbjct 356355 TTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACTTCTAGAGTG 356414
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| ||||| || || ||||| || || |||||||||
Sbjct 356415 ATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCATT 356453
Score = 152 bits (168), Expect = 9e-32
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| || | ||| || || ||||| || || || |||||| || ||||| ||||| |
Sbjct 352152 TTCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAG 352211
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| | || || |||||||| || || || ||||| || || | | ||| ||||| || |
Sbjct 352212 ACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAG 352271
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| ||||| ||||| || ||||| ||||| ||| || || ||||||| || |||||
Sbjct 352272 GAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTA 352331
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| |||||||||||||| || | || || || || || |||||
Sbjct 352332 CTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| ||||| || || ||||| || || || |||||| || ||||| ||||| ||
Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| || |||||||| || ||||| || || || || | | ||||||||| || |||
Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||| || ||||| ||||| || || || ||||||| | |||||||
Sbjct 357355 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACT 357414
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449
|||| ||||| ||||| || || || ||||| ||
Sbjct 357415 TCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAAC 357449
Score = 111 bits (122), Expect = 3e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398
||||||||| || ||||| ||||| ||||| || ||||| ||||| || || || ||
Sbjct 352030 TTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGT 352089
Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458
||||| | ||||||||||| |||||||||||||| || || ||||| || || |||||
Sbjct 352090 GTCTGACGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAGTGTCTTAACAAAAATCTG 352149
Query 68459 CATT 68462
||||
Sbjct 352150 CATT 352153
Score = 105 bits (116), Expect = 1e-17
Identities = 97/123 (79%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398
||||||||| || ||||| ||||| ||||| || ||||| ||||| ||| || || ||
Sbjct 357111 TTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTAACGTTTTCAATTGT 357170
Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458
||||| || ||||||||||| |||||||||||||| || | || || || || || ||
Sbjct 357171 GTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTG 357230
Query 68459 CAT 68461
|||
Sbjct 357231 CAT 357233
>seq25
Length=1883024
Score = 165 bits (182), Expect = 2e-35
Identities = 169/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306
|| || |||||||||| || || ||||| || |||||||| || || || || | |||
Sbjct 1512037 CGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCA 1512096
Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366
|||||||| ||||| || ||||| || | || ||||| || || ||||| |||||||||
Sbjct 1512097 TCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTG 1512156
Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426
||||||||||| ||||| || ||||| ||||||| | ||| || || | ||||||
Sbjct 1512157 TCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATT 1512216
Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467
|||||||| || || || || || || || ||||| ||||
Sbjct 1512217 GTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCATGCTGCT 1512257
>seq428
Length=160056
Score = 140 bits (154), Expect = 6e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309
|| ||||| || | || || || ||||||||||| ||||| || | || | ||||||
Sbjct 129655 AAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCT 129596
Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369
|| || || || || || || || || | ||||||||| |||||||| ||||| || |||
Sbjct 129595 TCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCT 129536
Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429
|| || |||||||| || ||||| || || | | ||| || || || ||||||||
Sbjct 129535 TGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTC 129476
Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| ||||| | ||||| |||||||| |||||
Sbjct 129475 TTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921576457123360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |