Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq428 140 8e-28
seq218 132 1e-25
seq25 98.7 2e-15
seq296 86.0 1e-11
>seq428
Length=160056
Score = 140 bits (154), Expect = 8e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || || || | | || || || ||||| ||||||||||| || ||
Sbjct 129635 TTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAA 129576
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| ||||| ||||| | ||| |||||||||||||| |||||||| || ||||| ||
Sbjct 129575 AATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGGATTTTTGCCTTCACATT 129516
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | |||| || ||| || || | ||||| ||||| || || | |||||| ||
Sbjct 129515 TTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCAC 129456
Query 288462 GAATATCTGCATTATGTTATTCTAA 288486
|||||| ||||| ||| | ||||
Sbjct 129455 GAATATTTGCATCCTGTGAGGCTAA 129431
>seq218
Length=661058
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317
||| ||||| | ||| | ||| ||||||||| |||||||| |||| ||| || || ||
Sbjct 356465 TCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACC 356524
Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377
||||| | |||||||||||| ||||| | | ||| ||| ||| || ||||||||
Sbjct 356525 ATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTT 356584
Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437
|| || ||||| ||||| || || || || | ||| | ||| ||||| | |||||
Sbjct 356585 GTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGAT 356644
Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| || || || || ||||| ||||| || |||||
Sbjct 356645 CGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || || | ||| | ||| | || ||| || || |||||||| || |
Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||| ||||| || ||||| || || || || ||||| |||||| ||||
Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || || || ||||| ||||| ||||||||||| | ||| | ||||||
Sbjct 356118 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACT 356177
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || || || || | || |||||||| || |||||
Sbjct 356178 TCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224
Score = 87.8 bits (96), Expect = 4e-12
Identities = 140/200 (70%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
|| || ||||| || || || || || | | || | || ||||| |||||||| ||
Sbjct 352184 GTACTCTCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCG 352243
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || |||| ||| || || ||||| || |||||||| |||||||| || ||
Sbjct 352244 GCAAAAATCAAACGTTGCTGG---TCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCC 352300
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||||||||| || | || | ||||||||| || ||||| || || || || |
Sbjct 352301 TTCACGTTTTCAATTGTGTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAAC 352360
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || || || || |||||
Sbjct 352361 GTTTTAACAAAAATTTGCAT 352380
>seq25
Length=1883024
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| || || |||||||| | || || || || ||||||||||| || || |||||
Sbjct 1512060 TTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAA 1512119
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| | | ||||||| | || || ||||| || || || || ||||| || || ||
Sbjct 1512120 AATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTCGCCTTTACATT 1512179
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | || | ||| || || || ||||| || || ||||| ||||| || ||
Sbjct 1512180 TTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCAC 1512239
Query 288462 GAATATCTGCAT 288473
|| || |||||
Sbjct 1512240 AAAAATTTGCAT 1512251
>seq296
Length=775295
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476
||||| || | |||||| | ||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 227795 CAAGCCTCCACTTCAGAGCTATATGGTAAAGTTCAAGAAATTCCACAGACGGAAAAGACG 227736
Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGT 72503
|| ||||| |||||| ||| ||||||
Sbjct 227735 CCATTTTACCCTCGATCCCCATACGGT 227709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179594124083864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |