Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq428 140 8e-28 seq218 132 1e-25 seq25 98.7 2e-15 seq296 86.0 1e-11 >seq428 Length=160056 Score = 140 bits (154), Expect = 8e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || || | | || || || ||||| ||||||||||| || || Sbjct 129635 TTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAA 129576 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| ||||| | ||| |||||||||||||| |||||||| || ||||| || Sbjct 129575 AATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGGATTTTTGCCTTCACATT 129516 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | |||| || ||| || || | ||||| ||||| || || | |||||| || Sbjct 129515 TTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCAC 129456 Query 288462 GAATATCTGCATTATGTTATTCTAA 288486 |||||| ||||| ||| | |||| Sbjct 129455 GAATATTTGCATCCTGTGAGGCTAA 129431 >seq218 Length=661058 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| ||||| | ||| | ||| ||||||||| |||||||| |||| ||| || || || Sbjct 356465 TCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACC 356524 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 ||||| | |||||||||||| ||||| | | ||| ||| ||| || |||||||| Sbjct 356525 ATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTT 356584 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || || ||||| ||||| || || || || | ||| | ||| ||||| | ||||| Sbjct 356585 GTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGAT 356644 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || ||||| ||||| || ||||| Sbjct 356645 CGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || | ||| | ||| | || ||| || || |||||||| || | Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| || ||||| || || || || ||||| |||||| |||| Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || ||||| ||||| ||||||||||| | ||| | |||||| Sbjct 356118 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACT 356177 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || | || |||||||| || ||||| Sbjct 356178 TCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || || ||||| || || || || || | | || | || ||||| |||||||| || Sbjct 352184 GTACTCTCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCG 352243 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||| ||| || || ||||| || |||||||| |||||||| || || Sbjct 352244 GCAAAAATCAAACGTTGCTGG---TCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCC 352300 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||||||||| || | || | ||||||||| || ||||| || || || || | Sbjct 352301 TTCACGTTTTCAATTGTGTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAAC 352360 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || || || ||||| Sbjct 352361 GTTTTAACAAAAATTTGCAT 352380 >seq25 Length=1883024 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || |||||||| | || || || || ||||||||||| || || ||||| Sbjct 1512060 TTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAA 1512119 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | ||||||| | || || ||||| || || || || ||||| || || || Sbjct 1512120 AATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTCGCCTTTACATT 1512179 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| || || || ||||| || || ||||| ||||| || || Sbjct 1512180 TTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCAC 1512239 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 1512240 AAAAATTTGCAT 1512251 >seq296 Length=775295 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| || | |||||| | ||||| ||||| ||||||||||| ||||||||||| || Sbjct 227795 CAAGCCTCCACTTCAGAGCTATATGGTAAAGTTCAAGAAATTCCACAGACGGAAAAGACG 227736 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGT 72503 || ||||| |||||| ||| |||||| Sbjct 227735 CCATTTTACCCTCGATCCCCATACGGT 227709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179594124083864