Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq218 102 9e-17
seq428 96.9 4e-15
seq195 95.1 1e-14
seq54 95.1 1e-14
seq285 86.0 7e-12
seq25 86.0 7e-12
>seq218
Length=661058
Score = 102 bits (112), Expect = 9e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| | |||||| || ||||||| || || |||||||||||||| ||||
Sbjct 356225 ACCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGA 356284
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || | || |||| |||||| ||||| || || || || || ||||| | ||
Sbjct 356285 AAGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGG 356344
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCA 42159
| | ||||||| | ||| |||| | || | || | | | || || | || |
Sbjct 356345 AATACCTTCCTTGT-CTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAA 356403
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
| || | |||||||| || || || || |||||||||||||| ||||||
Sbjct 356404 CTTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCATT 356453
Score = 86.0 bits (94), Expect = 7e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||| | ||| || |||||||| | || ||||| || ||||| |||||||||| |
Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| ||| | | || || | || ||||| || || || | || |||||||| | ||
Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | || |||||| ||| || || | | | | ||||| | ||| ||
Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||||||||||| || |||| ||| || ||||| ||||||||
Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380
>seq428
Length=160056
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| || || | || |||||||||||||| |||||||| || ||||||||||
Sbjct 129671 ACCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGA 129612
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| ||| || | || || | || || ||||| || || || || || ||||| | |||
Sbjct 129611 CAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGG 129552
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | || || || ||||||| || | | | | || ||| || ||| ||
Sbjct 129551 AATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGAC 129492
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||| || ||||||| ||||| || || ||||||||
Sbjct 129491 CTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444
>seq195
Length=555810
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 94697 CTCCCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 94756
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 94757 TACTACCGAGGA 94768
>seq54
Length=1232090
Score = 95.1 bits (104), Expect = 1e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 914789 CTCCCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 914848
Query 57067 TACTACCGAGGA-TTGA 57082
|||||||||||| ||||
Sbjct 914849 TACTACCGAGGACTTGA 914865
>seq285
Length=646398
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071
|||| | |||||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 358012 CGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 357953
Query 57072 CCGAGGA 57078
|||| ||
Sbjct 357952 CCGAAGA 357946
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071
|||| | |||||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 358179 CGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 358120
Query 57072 CCGAGGA 57078
|||| ||
Sbjct 358119 CCGAAGA 358113
>seq25
Length=1883024
Score = 86.0 bits (94), Expect = 7e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||||||||||||||| |||||||| || || || || || ||||| || || ||||
Sbjct 1512024 ACCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGA 1512083
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || |||| |||||||||||||| || | | ||| || || | ||
Sbjct 1512084 AAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGG 1512143
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | ||||||| | ||| | || | || | | | | ||||| | ||| |
Sbjct 1512144 AATACCTTCCTTGT-CTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAA 1512202
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | ||||| ||||| || || || || || ||||| ||||||||
Sbjct 1512203 CCTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCAT 1512251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543185720841920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |