Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq310 194 2e-44 seq218 134 1e-26 seq428 132 5e-26 seq25 95.1 1e-14 >seq310 Length=366558 Score = 194 bits (214), Expect = 2e-44 Identities = 558/848 (66%), Gaps = 13/848 (2%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| || || || |||| ||| |||| | | |||| |||||||||| ||| Sbjct 101430 GATGCCAAATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAACAATTTCTGTGCAT 101489 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 ||||| |||| || ||| || || | ||||| ||||| ||| |||||||||| ||| Sbjct 101490 AAATTGCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTCTGTTGCATGCATCT 101549 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 || || | ||| | || || || ||||| ||||| | |||| || | | ||| | Sbjct 101550 TTATATAGCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTATAGCATGCCACA-A 101608 Query 154767 CTTC-GCGCCTCAACTTGACAAGTAAATCGATTTTC-GCTCTCATATTGTTCGTACAGTT 154824 ||| | || |||||| || | || | ||| ||| ||||| | ||| |||| | Sbjct 101609 TTTCTGAGCAGGTACTTGAGAAATGTATTTACCTTCTGCT-TCATACTTTTCATACAACT 101667 Query 154825 TTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATG 154884 |||||||| | | | || | | |||||||| | | |||||||||| || Sbjct 101668 GTTCAAACTTTTCTCCCCAATTATCGTAAAGTCCGGGACATTGATGAGGACACATCAGTG 101727 Query 154885 ACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACA 154944 |||| | ||||||| || | ||||||||||||||| || | ||| | || || | Sbjct 101728 ACCAGTGCCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGTATCCATAGGGCATAAA 101787 Query 154945 ACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCAT 155004 ||||||| | || | | ||||| || | ||| || ||||| ||||| ||| Sbjct 101788 ACAAATCTCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTCAAATTTAAAAATTCAA 101847 Query 155005 ATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC---TTTGCGTTTTCCTC 155061 ||||||| || ||||| || || | ||| | || | || || | | || |||| Sbjct 101848 ATATGTCTGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCAGGTCTCTTGTTACCTC 101907 Query 155062 CTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGG 155121 ||||||| || | | | ||||||| | || || | || || | | ||| | | Sbjct 101908 CTTGATCTACATATCTGGCTAAATTATTAAAAACACGAAGCATAGGAACTAAACCGTTCG 101967 Query 155122 CCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGC 155181 |||||||||||||| ||| || || |||||| || || || | | || Sbjct 101968 AAGTGCCGTTGGTGCCTGCTATGAAACTACCTTTAGCACGTATATTGTGCACGCTTATGC 102027 Query 155182 CCAAACCTCC-GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCT 155240 ||||||| || |||| ||||||| || | |||| | |||| || | || ||| Sbjct 102028 CCAAACCACCTGCCG-ATTTAGAAATGAGAGCACTTGTAGTCAAACATTTACAAATGCCT 102086 Query 155241 TTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGG--TTGAGGGC 155298 | ||||| || || || | | |||||||||||| || | ||||| ||| || | Sbjct 102087 TCAATGCTATCATCAGGCATTGCTACCAAGAAACACGATGAAAGCTGAGGTCTTGTGGTC 102146 Query 155299 AGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGT 155358 || || | || | |||||||| || ||||| || | | | | |||| |||| Sbjct 102147 --CCAGCTGAGAACAGAGTAGGACTTGCATGTGTGAAAAATCGATCTGACATTAAATTGT 102204 Query 155359 AAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCA 155418 | ||||| || ||||| || || || | ||| || || | || || ||||| |||| Sbjct 102205 ACGTTTCTATTGCGGCATCTATATCTTTATAGTGAATGCCCACAGCAACTCGCATAAGCA 102264 Query 155419 TGTGTTGA 155426 |||||||| Sbjct 102265 TGTGTTGA 102272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 454/710 (64%), Gaps = 27/710 (4%) Strand=Plus/Plus Query 153807 TTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTTT 153866 ||||| ||||||||||| || || || || || ||||| |||||||||| | || | Sbjct 100645 TTAAA-GACTGGCTCTGGTCAATAAAGGCTCCACGATCTGCCGCCATGTTTAA-AATTAC 100702 Query 153867 TTACTGCTCA-TTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATC 153925 || ||| | |||||||||||||||| || | ||| || || ||||| || | Sbjct 100703 TTTCTGTGAAATTTCCCACACAGTTTTATATATCTTTTTCATATCATCGGGAATTCCTGG 100762 Query 153926 AATTTTCTGCACACTGCCTCCGGCCGCTATAA--TGGAATTGCGCATGTGGTCGTCGTAC 153983 ||| || || | ||| | || | || ||| || | || ||| || || Sbjct 100763 AATATTTTGAATTGAGCCACAATTGGCAAGAACCTGGTTTTTC--ATCACGTCATCCCAC 100820 Query 153984 A-----AATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGC 154038 | || | |||| |||||| || ||| || ||||| | || ||| || | Sbjct 100821 AGTCCTAACTCAGTC-----AAATCTCTAAGCAAATGATGGTTGACAACGAAAAATTCTC 100875 Query 154039 CGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGC 154098 | | || ||||| | ||| | ||| ||| | || || | ||||| || || | Sbjct 100876 CAGATAAAACGCGTCTTGTATATAGATTCGAAGTGTATGGTTCTACAGATTCATTATTAC 100935 Query 154099 CTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAAC 154158 | || ||||| ||||| | || || ||||| || | | || || |||| | || Sbjct 100936 CCAAAATTTGGGCTGTTGAAGCGGTAGGCATTGGGGCAAGAAGTAATGAATTTCTAATAC 100995 Query 154159 CGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG--TTGCAC 154216 ||| || ||||| | ||| ||| | |||||| |||||||| || || || | Sbjct 100996 CGTACTTAGCAATTTTCGCTTTCAAAGCACCCCAATCCCACAAGTCTGTGGGAGTTTTA- 101054 Query 154217 GTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTA 154276 |||||||| || || || |||| ||| || | ||||| | |||| | || || Sbjct 101055 -TTCCACATATCATACTGTAAAATCCCCTTGCTTACAGGACTACCTTCATAAGTGGAATA 101113 Query 154277 CGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTC 154336 || || | | ||| | || || || ||||| | || | || || | ||||| Sbjct 101114 AGGACCATCTTTCTCTGCGATTTCACAGCTTGCTTCAAGTGCACCGTAATACAAAGTTTC 101173 Query 154337 GGCAATTTGTTTGTTTAACATTTTG--GCTTTGTCACTTTCGTACGGCAATCCCAA-TAT 154393 | |||||||| | |||| ||| | |||| || || || | | || | || || Sbjct 101174 GAAAATTTGTT-GATTAAG-TTTCGCAGCTTCAGGGCTGTCATAAG-CTATACGAAGTAA 101230 Query 154394 ACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGA 154453 | |||||||||||| | ||||| | || | ||||| |||||||| | | ||| || Sbjct 101231 AATAAAAGCATCGGCTAAACCTTGTACACCGATTCCAATCGGTCTGTGCCTCACATTTGA 101290 Query 154454 TTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTA 154503 |||||| | | ||||||||||| | ||||||||||| |||| Sbjct 101291 GGTTTTGGCCTCTGGTACGGGATAATAATTAACGTCGATAATTTTGTTTA 101340 >seq218 Length=661058 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | ||||||||||||||||| ||||| || | | |||||| | ||||| Sbjct 356244 ACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTCT 356303 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | |||||| || ||| |||| || || || ||||| |||||||| ||||| || ||||| Sbjct 356304 AACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG- 356362 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | |||| ||||| || || | ||||||| | || ||||||| ||| | |||||| Sbjct 356363 AATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACTTCTAGAGTGATGGTCTT 356422 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | ||| ||||| || || |||||| Sbjct 356423 TCCAGTAAGAGTCTTTACAAAGATCTGCATT 356453 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| || || | ||| | || |||||||||||||| || ||||| | | Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| || || || || ||| | || | || |||||| || || ||| Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| ||||| | |||||||||| ||| ||| | |||||| | || || Sbjct 356574 ATGCCTTCTTTGTCTTG-AATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAAC 356632 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||| | || || || || | || || |||||||||||||| Sbjct 356633 TTCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||||| || |||||||| || ||||||||||| | | || | | |||||| Sbjct 356700 ACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAATGTCCTACCATCTTCA 356759 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||||||||| ||| |||| | | || ||||| || ||||| || ||||| ||||| Sbjct 356760 AGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCCTCTTTATCTTGA 356819 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| |||||| ||| | ||| ||| | || || || | || | || || Sbjct 356820 ATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACCTCAAGGGTGATTGTTTTA 356879 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | || || || ||||| |||||| Sbjct 356880 CCAGTTAGTGTCTTAACAAAAATCTGCATT 356909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| |||||||||||||| | | || | | ||||| | || || |||||| || Sbjct 352190 TCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAA 352249 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | || |||||||| |||||||| |||||||| || || || || ||| || Sbjct 352250 ATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTT 352309 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||| || | || ||||| | || | ||| || || || || ||||| || Sbjct 352310 TCAATTGTGTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACA 352369 Query 64433 AAAATTTGCAT 64443 ||||||||||| Sbjct 352370 AAAATTTGCAT 352380 >seq428 Length=160056 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | |||||| | || | ||| | |||||||| ||||| ||||||||||| | Sbjct 129671 ACCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGA 129612 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || || || ||| |||| || || || ||||| || || Sbjct 129611 CAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGG 129552 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| ||||| |||||| ||| ||| || | |||||| | || || Sbjct 129551 AATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGAC 129492 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | |||||| || || ||||| || ||||| |||||||| Sbjct 129491 CTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq25 Length=1883024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| |||||||| || || | | || || | ||||| | ||||| || Sbjct 1512055 GTCGATTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCATCTTCTAATTGCTTACCA 1512114 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || ||| || || |||||||| ||||| || ||||| || || |||| Sbjct 1512115 GCGAAAATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTCGCCTTT 1512174 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||| || || || || || | || | || || ||||| | |||| Sbjct 1512175 ACATTTTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATTGTTTTTCCGGTAAGAGTT 1512234 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 1512235 TTCACAAAAATTTGCAT 1512251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499619892706720