Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq310 116 4e-21
seq218 107 2e-18
>seq310
Length=366558
Score = 116 bits (128), Expect = 4e-21
Identities = 471/734 (64%), Gaps = 6/734 (1%)
Strand=Plus/Plus
Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086
|||||||| || ||| || || | || || ||||| ||||| ||| |||| |
Sbjct 100854 TGGTTGACAACGAAAAATTCTCCAGATAAAACGCGTCTTGTATATAGATTCGAAGTGTAT 100913
Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146
||||| | ||||| ||||| || | ||||| || || | ||||| ||||| ||
Sbjct 100914 GGTTCTACAGATTCATTATTACCCAAAATTTGGGCTGTTGAAGCGGTAGGCATTGGGGCA 100973
Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206
| | || ||||| | | |||| | ||| | | ||||| || |||||||
Sbjct 100974 AGAAGTAATGAATTTCTAATACCGTACTTAGCAATTTTCGCTTTCAAAGCACCCCAATCC 101033
Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACA-CTCCTCGACTGGCGGG 153265
|||| | | || || |||||||| || |||||||| | | ||| | || | ||
Sbjct 101034 CACAAGTCTGTGGGAGTTTTATTCCACATATCATACTGTAAAATCCCCTTG-CTTACAGG 101092
Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325
||| || || | || || || || | || | ||| ||||| || || ||
Sbjct 101093 ACTACCTTCATAAGTGGAATAAGGACCATCTTTCTCTGCGATTTCACAGCTTGCTTCAAG 101152
Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385
|| || || || | |||||| ||||||| ||| || || ||||| ||| ||
Sbjct 101153 TGCACCGTAATACAAAGTTTCGAAAATTTGTTGATTAAGTTTCGCAGCTTCAGGGCTGTC 101212
Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445
|| | || || || | | ||| || ||||| | ||| || | ||||| || || ||
Sbjct 101213 ATAAGCTATACGAAGTAAAATAAAAGCATCGGCTAAACCTTGTACACCGATTCCAATCGG 101272
Query 153446 TCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCGATAA 153504
|| ||| || | || | | || ||| | || |||||| | ||| |||||||
Sbjct 101273 TCTGTGCCTCACATTTGAGGTTTTGGC-CTCTGGTACGGGATAATAATTAACGTCGATAA 101331
Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564
||||||| ||||| | || ||||| || || | || | |||| ||||| ||||
Sbjct 101332 TTTTGTTTAGGTTTTTCGTAACAACTTTGGTGATTTCTTTTAACTTCTTAAAATCGTAGG 101391
Query 153565 TCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCC 153623
|| ||| |||| || | |||||| |||| || |||| ||||||||| ||
Sbjct 101392 ATTTTCTATCGG-GCGTTACAAACATATTCACTGCAAGCGATGCCAAATTACAGACCGCA 101450
Query 153624 GTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683
|| || | | | || | || || || | ||| | ||||||| | | ||
Sbjct 101451 ACTTCGTCAGGGGAAGTATATTCAACAATTTCTGTGCATAAATTGCTGCTTCTAATTGTT 101510
Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743
|| || ||||| ||||||||||| | ||||| || ||||| | |||||| | ||
Sbjct 101511 CCTAAGTTTTGTTGATTGCTTTTTCTGTTGCATGCATCTTTATATAGCATGAAAGGAGTC 101570
Query 153744 CCGGTCTCGACTTG 153757
|| || ||||||||
Sbjct 101571 CCAGTTTCGACTTG 101584
>seq218
Length=661058
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| | ||||||||||||||| | | || || |||||||| ||||||||
Sbjct 356226 CCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAA 356285
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || || | || || || | | | |||||||| |||||||| |||||
Sbjct 356286 AGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 356345
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566
|||||||| ||||| ||| |||| | ||||| | ||| | || || | | ||| ||
Sbjct 356346 ATACCTTCCTTGTC-TTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAAC 356404
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||| ||||| |||||||| ||||||||
Sbjct 356405 TTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| | ||| ||||| ||||| | | | ||| || ||||||||||| || |
Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | || || | ||||||||||| | | || | ||| || ||||| |||||
Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||||||||| ||| || || | | ||| | ||||| | | || ||
Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
|| | || | ||||| ||||| | ||||| |||||||| |||||| ||
Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCATGCCT 352384
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| | ||||||||||||||| | | | || || || || |||||||| || |
Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || | || || || || || || | | | |||| | |||||||| || ||
Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| ||||| || ||| |||| | |||| | || | ||||| | || || ||
Sbjct 356802 ATACCCTCTTTATCT-TGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTAC 356860
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | ||||||||||| || || || ||||||||||||||
Sbjct 356861 CTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496237661319360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |