Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq428 116 3e-21
seq218 109 4e-19
seq25 107 1e-18
>seq428
Length=160056
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| || | ||||||||| || ||||| | || || || ||||| |||||||||||
Sbjct 129670 CCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGAC 129611
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | ||||| |||||||| ||||| | || | ||| |||||||| ||||
Sbjct 129610 AAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGA 129551
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||| || || ||||| || ||| |||| || |||||| ||| ||
Sbjct 129550 ATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACC 129491
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||| || ||||| ||||| || | ||| || || || ||||||||
Sbjct 129490 TCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444
>seq218
Length=661058
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| |||| |||||| | || ||||| || || || |||||||| || || |||||| |
Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | |||||| || || | || || | ||| || || ||||
Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| |||||| ||| ||| | || || ||||| ||| ||
Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| || || |||||||| || || || || || ||||||||||||
Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATA 356681
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| | | |||||| ||||| |||||| ||||| || |||||||||||
Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | |||| | ||||| |||||||| || || | |||||||| || ||||| |||
Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| || || || || |||| || || || ||||||
Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || |||||||| || || | ||||| ||||||||||||||
Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380
Score = 105 bits (116), Expect = 5e-18
Identities = 153/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGT 15022
||||||||||||||||| || ||||| || |||||||||| | || || | || | |
Sbjct 356697 AAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAAT--CAGACAATGTCCTACCAT 356754
Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082
|||| | || |||||||| | || || | |||||||| |||||| || || || |
Sbjct 356755 CTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCCTCTTTAT 356814
Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142
| |||||| ||||| | ||||| || || |||||| || | ||| || |
Sbjct 356815 CTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACCTCAAGGGTGATTG 356874
Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||||| || || || || |||||||| |||||
Sbjct 356875 TTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
||||||||||| || || || |||||||| || ||||| || || | | | |||
Sbjct 356241 AAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCT 356300
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
||||| || || ||||| | || | ||| |||||||| ||||| |||||||||||
Sbjct 356301 TCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCT 356360
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
|||||| ||| || |||| || ||||| || || |||| || |||||
Sbjct 356361 TGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACTTCTAGAGTGATGGTC 356420
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| |||||||| || |||||
Sbjct 356421 TTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|||||||| | || || || ||||| | ||||| || || || || || |||||
Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| ||| | ||||| || ||||| || || | || | ||| ||||| || |||
Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| ||||||| ||| || ||||||| ||||| |||||
Sbjct 356118 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACT 356177
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | ||| || |||||||| || | ||||| || || |||||||||
Sbjct 356178 TCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 356225
Score = 98.7 bits (108), Expect = 7e-16
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCG 15021
|||||| ||||| |||||| ||||| || |||||||||| | || || |||| |
Sbjct 357249 TAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAAT--CAGACAATGTTCTACCA 357306
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
||||| ||||| || ||||| | |||||||| |||||||| ||||| ||||| |||
Sbjct 357307 TCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGAATACCTTCTTTG 357366
Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141
|| || ||| || ||| |||| || || || |||||| || | || ||
Sbjct 357367 TCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACTTCCAGTGTGATT 357426
Query 15142 GTTTTACCTGTCAGAGTTTTTACAA 15166
|||||||| || || || || ||||
Sbjct 357427 GTTTTACCAGTTAGTGTCTTAACAA 357451
>seq25
Length=1883024
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| |||| || | ||| || || || | ||| || ||||| || ||||| || ||
Sbjct 1512025 CCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAA 1512084
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | | ||||||||||| || |||||| | || || | |||||| || |||
Sbjct 1512085 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGA 1512144
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| ||| || |||||| |||| || || || ||| ||
Sbjct 1512145 ATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAACC 1512204
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || ||||| || || |||||||| ||||||||||||||
Sbjct 1512205 TCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCAT 1512251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357374629408580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |