Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq218 136 9e-27 seq428 134 3e-26 seq25 102 2e-16 >seq218 Length=661058 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || ||| || || | |||||| |||| |||||| || |||||||||| || Sbjct 352178 TGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGT 352237 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| || || | ||| |||||||| ||| ||| |||||| ||||| ||||| Sbjct 352238 TTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTA 352297 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| ||| | ||||||| || |||||| |||| ||||| || || || || Sbjct 352298 GCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTT 352357 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||||| ||||||||||| Sbjct 352358 AACGTTTTAACAAAAATTTG 352377 Score = 104 bits (114), Expect = 6e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| || || ||||| | || || || | | || | || Sbjct 356465 TCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACC 356524 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||||| || ||||| || ||||| | | |||||| || || ||| |||||| Sbjct 356525 ATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTT 356584 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || ||||| |||||| || || || | || |||| || ||| || || || |||| Sbjct 356585 GTCTTGAAT-TTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGA 356643 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| ||||| || ||||| |||||||| Sbjct 356644 TCGTTTTACCAGTGAGGGTCTTCACGAAAATTTG 356677 >seq428 Length=160056 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| |||||||||| |||||| |||| |||||| | |||||||||| || ||||| Sbjct 129640 GTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCCAATTGTTTTCCA 129581 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || ||||| || ||||| || |||||||||| || || || ||| |||| Sbjct 129580 GCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGGATTTTTGCCTTC 129521 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| || || | | ||| || || || ||||| ||||||||||| | ||| Sbjct 129520 ACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTCTTACCCGTTAAAGTC 129461 Query 199613 TTCACAAAAATTTG 199626 ||||| || ||||| Sbjct 129460 TTCACGAATATTTG 129447 >seq25 Length=1883024 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| || || || | ||| ||||||| | ||| | |||||||| | ||||| || Sbjct 1512055 GTCGATTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCATCTTCTAATTGCTTACCA 1512114 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | | ||| || || ||| ||| ||||| || |||||||| ||| Sbjct 1512115 GCGAAAATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTCGCCTTT 1512174 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| ||||||| | ||| || || | ||||| || || || || |||||| Sbjct 1512175 ACATTTTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATTGTTTTTCCGGTAAGAGTT 1512234 Query 199613 TTCACAAAAATTTG 199626 |||||||||||||| Sbjct 1512235 TTCACAAAAATTTG 1512248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178861361527196