Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12 233 2e-56 seq428 116 4e-21 >seq12 Length=2314596 Score = 233 bits (258), Expect = 2e-56 Identities = 437/642 (68%), Gaps = 0/642 (0%) Strand=Plus/Minus Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 ||||| || |||||||| || |||||||| || || || | ||||| || || || Sbjct 281805 AACATTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAA 281746 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || |||| || ||||| || || ||||| ||||||||||| || || || ||||| || Sbjct 281745 AATGTCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCT 281686 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 |||||||| | || || || || || || || || | || || ||| || || | Sbjct 281685 GAAAAGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTC 281626 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || ||| |||||| | || ||||| || ||||| | || || || ||||| ||||| Sbjct 281625 TTACTGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCA 281566 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTC 133185 || || || || | | ||||||||| | | | | || ||||| ||||| || Sbjct 281565 ATAGCATTGAAAAGAAATTCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTA 281506 Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 ||||||||| || || | || || ||||| ||||| || || |||||||| || ||| Sbjct 281505 CTATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCC 281446 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || || || ||||||||| ||| | ||| || || ||||| || || || || || Sbjct 281445 TCAGTTACTTGTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCA 281386 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 || || |||||||| || || || |||||||| | || | | ||| Sbjct 281385 GATGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTA 281326 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||| | |||||| || ||||| || || || ||||| || || || || Sbjct 281325 TCCCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCA 281266 Query 133426 GCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGG 133485 |||| |||||| | ||| ||||| | |||||| || ||||| || || |||| | Sbjct 281265 GCTTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTCTT 281206 Query 133486 GGGTTTTCGCGCAACAGCGGCTCCGCTTGGGGGTCGAACGGC 133527 || ||||| | | || || || |||| || || ||| || Sbjct 281205 GGATTTTCTCTAAGCAATGGTTCTACTTGTGGATCAAACTGC 281164 >seq428 Length=160056 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || | ||||| || |||||||| | || ||||| | || Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | |||||||| || ||||| |||||||| | |||||| Sbjct 129504 GATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAA 129563 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || ||||| |||| || | || || | || |||||| Sbjct 129564 CAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAAC 129623 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| |||| |||||||||| | | ||||| || || Sbjct 129624 ATCCAAAAGGAATCGACATTGCATTTGGTCTTAAGATTGAGGGGAGG 129670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500147866385920