Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq310 464 7e-126 seq12 392 4e-104 >seq310 Length=366558 Score = 464 bits (514), Expect = 7e-126 Identities = 1212/1842 (66%), Gaps = 53/1842 (3%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 |||||||| |||||||||||||||||| || || || |||||||||| ||||| || Sbjct 100544 TTTTGTTCTTAAATAATACATACCAGTTTTCAAGCCCTTCTTCCATCCATAAAAATGAAT 100603 Query 47069 --ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGA 47126 || | | | || ||| | || | | |||||||||||| | ||| || ||||| Sbjct 100604 GGACGACATTACTTG--ATAGTTTGGCTTTTCAATATGAATATTTAAAGACTGGCTCTGG 100661 Query 47127 TCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCAT 47186 |||||||| || || | ||| || ||||| | |||||| || | |||| || ||||| Sbjct 100662 TCAATAAAGGCTCCACGATCTGCCGCCATGTTTAAAATTACTTTCTGTGAAATTTCCCAC 100721 Query 47187 ACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATT-----AGTATTTTGAATAGATC 47241 || |||||||| || | ||| || || || |||| ||| | |||||||||| || | Sbjct 100722 ACAGTTTTATATATCTTTTTCATATCATC-GGGA-ATTCCTGGAATATTTTGAATTGAGC 100779 Query 47242 CTCCgttttctataattttgttttttaattcatttga--ccaaagttttcgttcagttaa 47299 | | || | | || | |||||| | ||| | | ||| ||| | ||||| || Sbjct 100780 CACAATTGGCAAGAACCTGGTTTTTCA--TCACGTCATCCCACAGTCCTAACTCAGTCAA 100837 Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATA 47359 | | | | |||| | || |||| |||||||||||||| || | | |||| Sbjct 100838 ATCTCTAAGCAAATGATGGTTGACAACGAAAAATTCTCCAGATAAAACGCGTCTTGTATA 100897 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 || ||| || |||||||||| |||||||||||| || |||||||| || ||||| || Sbjct 100898 TAGATTCGAAGTGTATGGTTCTACAGATTCATTATTACCCAAAATTTGGGCTGTTGAAGC 100957 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 |||||||| | |||| | ||| |||||| | || || || || | Sbjct 100958 GGTAGGCATTGGGGCAAGAAGTAATGAATTTCTAATACCGTACTTAGCAATTTTCGCTTT 101017 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 ||||||||| | |||| ||| |||||| | |||||| || | ||| Sbjct 101018 CAAAGCACCCCAATCCCACAAGTCTGTGGGAGTTTTATTCCACATATCATACTGTAAAAT 101077 Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 || || |||| ||| ||| | ||| || ||||||||| | | | |||| ||| Sbjct 101078 CCCCTTGCTTACAGGACTACCTTCATAAGTGGAATAAGGACCATCTTTCTCTGCGATTTC 101137 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 ||| |||||||| | ||||| ||||| | ||||| || |||| | || || ||| Sbjct 101138 ACAGCTTGCTTCAAGTGCACCGTAATACAAAGTTTCGAAAATTTGTTGATTAAGTTTCGC 101197 Query 47660 TGCTTCTGATGATTCAAAAG-GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAA 47718 ||||| | ||| ||| ||| || | ||| || || ||||| | Sbjct 101198 AGCTTCAGGGCTGTCATAAGCTATACGAAGTAAAATAAAA-GCATCGGCTAAACCTTGTA 101256 Query 47719 CACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATT 47778 |||| || ||||| ||||| || | ||| || | || ||||||| ||||| | Sbjct 101257 CACCGATTCCAATCGGTCTGTGCCTCACATTTGAGGTTTTGGCCTCTGGTACGGGATAAT 101316 Query 47779 TGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATT 47838 || | || |||||||| ||||| |||||| |||| | Sbjct 101317 AATTAACGTCGATAATTTTGTTTAGGTTTTTCGTAACAACTTTGGTGATTTCTTTTAACT 101376 Query 47839 TATTAAAATC---AAACTTGTTAT---TTATAACAAACCTATTAAGTGCTATAGATGCTA 47892 | |||||||| | || ||| | |||||| |||| | ||| | ||||| | Sbjct 101377 TCTTAAAATCGTAGGATTTTCTATCGGGCGTTACAAACATATTCACTGCAAGCGATGCCA 101436 Query 47893 GATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTAC 47952 |||||| || || || || | || |||||||| | ||||| | |||| ||| | Sbjct 101437 AATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAACAATTTCTGTGCATAAATTGC 101496 Query 47953 CACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAA 48012 | | | || || || || ||||| ||||| | |||| ||||| || || || | Sbjct 101497 TGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTCTGTTGCATGCATCTTTATATA 101556 Query 48013 GCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAG 48072 |||| ||||| || |||||||| | ||||| |||| |||| | ||| | || || Sbjct 101557 GCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTATAGCATGCCACAATTTCTGAG 101616 Query 48073 CCTTTA--TAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130 | || | | | | || |||| || ||| || || ||| |||| ||||| Sbjct 101617 CAGGTACTTGAGAAATGTA--TTTACCTTCTGCTTCATACTTTTCATACAACTGTTCAAA 101674 Query 48131 --TTCATCCCCATACACATTATC-TAA--CCCAGGACATTCATTAGGACACATCAATGAC 48185 || |||||| |||||| ||| || ||||||| || ||||||||||| |||| Sbjct 101675 CTTTTCTCCCCA-----ATTATCGTAAAGTCCGGGACATTGATGAGGACACATCAGTGAC 101729 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245 || | | ||| | || ||||| ||||||| | |||||||||||| || || ||| Sbjct 101730 CAGTGCCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGTATCCATAGGGCATAAAAC 101789 Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-AAGTTCAAGAAAGTCCAT 48304 ||||| || | ||| | ||||| || || |||| |||| || || || ||| || | Sbjct 101790 AAATCTCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTCAAATTTAA-AAATTCAAA 101848 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 ||| || |||||||||||||| | ||| || || | |||| |||| || |||||||| Sbjct 101849 TATGTCTGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCAGGTCTCTTGTTACCTCC 101908 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 |||||||| ||||||||| ||| ||| |||| | | ||| || || | ||| || || Sbjct 101909 TTGATCTACATATCTGGCTAAATTATTAAAAACACGAAGCATAGGAACTAAACCGTTCGA 101968 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 | || ||||| || | || |||| || |||| | |||||| | || || Sbjct 101969 AGTGCCGTTGGTGCCTGCTATGAAACTACCTTTAGCACGTATATTGTGCACGCTTATGCC 102028 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT----AAATTC 48540 | |||||||||| |||||| || ||||||| || || | ||| |||| | Sbjct 102029 CAAACCACCTGCCGATTTAGAAATGAGAGCAC----TTGTAGTCAAACATTTACAAATGC 102084 Query 48541 CTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAG 48600 |||| || |||||||| ||| || | ||||| || | || || | | | Sbjct 102085 CTTCAATGCTATCATCAGGCATTGCTACCAAGAAACACGATGAAA---GCTGAGGTCTTG 102141 Query 48601 T--TCCTGAATTA-AATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 | ||| | | || | || ||| |||||| | || || ||||| | || | Sbjct 102142 TGGTCCCAGCTGAGAACAGAGTAGGACTTGCATGTGTGAAAAATCGATCTGACATTAAAT 102201 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 | || ||||| || | | ||||||||| | || || || | || || ||||| | Sbjct 102202 TGTACGTTTCTATTGCGGCATCTATATCTTTATAGTGAATGCCCACAGCAACTCGCATAA 102261 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||||||||| || ||||| || | |||||| ||||| || ||| | Sbjct 102262 GCATGTGTTGAGGTCTTTCGACGATTTTTCCGTTGACTTTCAAGAGATACGAACGTTCTA 102321 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 | ||||||||||||||||| ||||| ||||| ||| ||||| Sbjct 102322 AAGTTTTAAAACCAAAATAATTGTAGGAAAAATCGCGATCAT 102363 >seq12 Length=2314596 Score = 392 bits (434), Expect = 4e-104 Identities = 644/923 (70%), Gaps = 18/923 (2%) Strand=Plus/Minus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 ||||| || ||||||||||| | ||| | |||||||||||||| || || || || Sbjct 282096 ACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTG 282037 Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780 || || | |||||| ||||| ||||| || |||||||| || || | | || || Sbjct 282036 GAAATTTTGTTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAAC 281977 Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCAT 18839 |||| || || | || |||||||||| ||||| || | ||||| | |||||||| Sbjct 281976 TCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGA-CATCAGTTTGCAATTCAT 281918 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 || |||| | ||||| | ||||| || | |||||| ||||| || || ||||| || Sbjct 281917 ACCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATC 281858 Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT----AGAAGATGTTTAAACA 18955 || ||| | |||| |||| || || ||| | | || || ||||| Sbjct 281857 GCGAATTATATCTGTTACTCGCTCTT--TT--GATGGTTTTTGAACAATATAAGAAAACA 281802 Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 | ||||| |||||||||||||| | || || || | | || | ||||||||||||| Sbjct 281801 TTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATG 281742 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 | | || ||||| || || | ||| || | ||| || |||| |||||| ||| |||| Sbjct 281741 TCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAA 281682 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 |||| || ||||| || |||||||| ||||| | || |||| | | |||| ||| Sbjct 281681 AGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTAC 281622 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 | ||||| | || ||||||||||||||||| || ||||| ||||| || || |||| Sbjct 281621 TGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAG 281562 Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----A 19251 ||| || ||| | ||| |||| || | |||| | | ||||| | | Sbjct 281561 CATTGAAAAGAAATTCTTTCTCTTCTGGGTC----AAATATATAAGTGTCAATGAGAGTA 281506 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 || |||||||||||||| |||||||| || || || || || || ||||| || | || Sbjct 281505 CTATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCC 281446 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 || |||| |||||||| || ||||| || || | |||||||| || ||||||||| Sbjct 281445 TCAGTTACTTGTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCA 281386 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 || |||||||| || | ||||||| ||| ||||| ||||||| | || || Sbjct 281385 GATGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTA 281326 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | ||| | || || ||||| | ||||||||||| |||||| || ||||| || Sbjct 281325 TCCCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCA 281266 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||| || ||| | | ||| || || ||||||| ||||||||||| || || || || Sbjct 281265 GCTTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTCTT 281206 Query 19552 TTATTTTCTTTAAGAATAGGTTC 19574 ||||||| |||| | ||||| Sbjct 281205 GGATTTTCTCTAAGCAATGGTTC 281183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562080778876320