Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq310 464 7e-126
seq12 392 4e-104
>seq310
Length=366558
Score = 464 bits (514), Expect = 7e-126
Identities = 1212/1842 (66%), Gaps = 53/1842 (3%)
Strand=Plus/Plus
Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068
|||||||| |||||||||||||||||| || || || |||||||||| ||||| ||
Sbjct 100544 TTTTGTTCTTAAATAATACATACCAGTTTTCAAGCCCTTCTTCCATCCATAAAAATGAAT 100603
Query 47069 --ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGA 47126
|| | | | || ||| | || | | |||||||||||| | ||| || |||||
Sbjct 100604 GGACGACATTACTTG--ATAGTTTGGCTTTTCAATATGAATATTTAAAGACTGGCTCTGG 100661
Query 47127 TCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCAT 47186
|||||||| || || | ||| || ||||| | |||||| || | |||| || |||||
Sbjct 100662 TCAATAAAGGCTCCACGATCTGCCGCCATGTTTAAAATTACTTTCTGTGAAATTTCCCAC 100721
Query 47187 ACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATT-----AGTATTTTGAATAGATC 47241
|| |||||||| || | ||| || || || |||| ||| | |||||||||| || |
Sbjct 100722 ACAGTTTTATATATCTTTTTCATATCATC-GGGA-ATTCCTGGAATATTTTGAATTGAGC 100779
Query 47242 CTCCgttttctataattttgttttttaattcatttga--ccaaagttttcgttcagttaa 47299
| | || | | || | |||||| | ||| | | ||| ||| | ||||| ||
Sbjct 100780 CACAATTGGCAAGAACCTGGTTTTTCA--TCACGTCATCCCACAGTCCTAACTCAGTCAA 100837
Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATA 47359
| | | | |||| | || |||| |||||||||||||| || | | ||||
Sbjct 100838 ATCTCTAAGCAAATGATGGTTGACAACGAAAAATTCTCCAGATAAAACGCGTCTTGTATA 100897
Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419
|| ||| || |||||||||| |||||||||||| || |||||||| || ||||| ||
Sbjct 100898 TAGATTCGAAGTGTATGGTTCTACAGATTCATTATTACCCAAAATTTGGGCTGTTGAAGC 100957
Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479
|||||||| | |||| | ||| |||||| | || || || || |
Sbjct 100958 GGTAGGCATTGGGGCAAGAAGTAATGAATTTCTAATACCGTACTTAGCAATTTTCGCTTT 101017
Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539
||||||||| | |||| ||| |||||| | |||||| || | |||
Sbjct 101018 CAAAGCACCCCAATCCCACAAGTCTGTGGGAGTTTTATTCCACATATCATACTGTAAAAT 101077
Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599
|| || |||| ||| ||| | ||| || ||||||||| | | | |||| |||
Sbjct 101078 CCCCTTGCTTACAGGACTACCTTCATAAGTGGAATAAGGACCATCTTTCTCTGCGATTTC 101137
Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659
||| |||||||| | ||||| ||||| | ||||| || |||| | || || |||
Sbjct 101138 ACAGCTTGCTTCAAGTGCACCGTAATACAAAGTTTCGAAAATTTGTTGATTAAGTTTCGC 101197
Query 47660 TGCTTCTGATGATTCAAAAG-GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAA 47718
||||| | ||| ||| ||| || | ||| || || ||||| |
Sbjct 101198 AGCTTCAGGGCTGTCATAAGCTATACGAAGTAAAATAAAA-GCATCGGCTAAACCTTGTA 101256
Query 47719 CACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATT 47778
|||| || ||||| ||||| || | ||| || | || ||||||| ||||| |
Sbjct 101257 CACCGATTCCAATCGGTCTGTGCCTCACATTTGAGGTTTTGGCCTCTGGTACGGGATAAT 101316
Query 47779 TGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATT 47838
|| | || |||||||| ||||| |||||| |||| |
Sbjct 101317 AATTAACGTCGATAATTTTGTTTAGGTTTTTCGTAACAACTTTGGTGATTTCTTTTAACT 101376
Query 47839 TATTAAAATC---AAACTTGTTAT---TTATAACAAACCTATTAAGTGCTATAGATGCTA 47892
| |||||||| | || ||| | |||||| |||| | ||| | ||||| |
Sbjct 101377 TCTTAAAATCGTAGGATTTTCTATCGGGCGTTACAAACATATTCACTGCAAGCGATGCCA 101436
Query 47893 GATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTAC 47952
|||||| || || || || | || |||||||| | ||||| | |||| ||| |
Sbjct 101437 AATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAACAATTTCTGTGCATAAATTGC 101496
Query 47953 CACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAA 48012
| | | || || || || ||||| ||||| | |||| ||||| || || || |
Sbjct 101497 TGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTCTGTTGCATGCATCTTTATATA 101556
Query 48013 GCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAG 48072
|||| ||||| || |||||||| | ||||| |||| |||| | ||| | || ||
Sbjct 101557 GCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTATAGCATGCCACAATTTCTGAG 101616
Query 48073 CCTTTA--TAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130
| || | | | | || |||| || ||| || || ||| |||| |||||
Sbjct 101617 CAGGTACTTGAGAAATGTA--TTTACCTTCTGCTTCATACTTTTCATACAACTGTTCAAA 101674
Query 48131 --TTCATCCCCATACACATTATC-TAA--CCCAGGACATTCATTAGGACACATCAATGAC 48185
|| |||||| |||||| ||| || ||||||| || ||||||||||| ||||
Sbjct 101675 CTTTTCTCCCCA-----ATTATCGTAAAGTCCGGGACATTGATGAGGACACATCAGTGAC 101729
Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245
|| | | ||| | || ||||| ||||||| | |||||||||||| || || |||
Sbjct 101730 CAGTGCCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGTATCCATAGGGCATAAAAC 101789
Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-AAGTTCAAGAAAGTCCAT 48304
||||| || | ||| | ||||| || || |||| |||| || || || ||| || |
Sbjct 101790 AAATCTCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTCAAATTTAA-AAATTCAAA 101848
Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364
||| || |||||||||||||| | ||| || || | |||| |||| || ||||||||
Sbjct 101849 TATGTCTGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCAGGTCTCTTGTTACCTCC 101908
Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424
|||||||| ||||||||| ||| ||| |||| | | ||| || || | ||| || ||
Sbjct 101909 TTGATCTACATATCTGGCTAAATTATTAAAAACACGAAGCATAGGAACTAAACCGTTCGA 101968
Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484
| || ||||| || | || |||| || |||| | |||||| | || ||
Sbjct 101969 AGTGCCGTTGGTGCCTGCTATGAAACTACCTTTAGCACGTATATTGTGCACGCTTATGCC 102028
Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT----AAATTC 48540
| |||||||||| |||||| || ||||||| || || | ||| |||| |
Sbjct 102029 CAAACCACCTGCCGATTTAGAAATGAGAGCAC----TTGTAGTCAAACATTTACAAATGC 102084
Query 48541 CTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAG 48600
|||| || |||||||| ||| || | ||||| || | || || | | |
Sbjct 102085 CTTCAATGCTATCATCAGGCATTGCTACCAAGAAACACGATGAAA---GCTGAGGTCTTG 102141
Query 48601 T--TCCTGAATTA-AATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657
| ||| | | || | || ||| |||||| | || || ||||| | || |
Sbjct 102142 TGGTCCCAGCTGAGAACAGAGTAGGACTTGCATGTGTGAAAAATCGATCTGACATTAAAT 102201
Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717
| || ||||| || | | ||||||||| | || || || | || || ||||| |
Sbjct 102202 TGTACGTTTCTATTGCGGCATCTATATCTTTATAGTGAATGCCCACAGCAACTCGCATAA 102261
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
||| | |||||||||||| || ||||| || | |||||| ||||| || ||| |
Sbjct 102262 GCATGTGTTGAGGTCTTTCGACGATTTTTCCGTTGACTTTCAAGAGATACGAACGTTCTA 102321
Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819
| ||||||||||||||||| ||||| ||||| ||| |||||
Sbjct 102322 AAGTTTTAAAACCAAAATAATTGTAGGAAAAATCGCGATCAT 102363
>seq12
Length=2314596
Score = 392 bits (434), Expect = 4e-104
Identities = 644/923 (70%), Gaps = 18/923 (2%)
Strand=Plus/Minus
Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720
||||| || ||||||||||| | ||| | |||||||||||||| || || || ||
Sbjct 282096 ACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTG 282037
Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780
|| || | |||||| ||||| ||||| || |||||||| || || | | || ||
Sbjct 282036 GAAATTTTGTTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAAC 281977
Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCAT 18839
|||| || || | || |||||||||| ||||| || | ||||| | ||||||||
Sbjct 281976 TCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGA-CATCAGTTTGCAATTCAT 281918
Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899
|| |||| | ||||| | ||||| || | |||||| ||||| || || ||||| ||
Sbjct 281917 ACCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATC 281858
Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT----AGAAGATGTTTAAACA 18955
|| ||| | |||| |||| || || ||| | | || || |||||
Sbjct 281857 GCGAATTATATCTGTTACTCGCTCTT--TT--GATGGTTTTTGAACAATATAAGAAAACA 281802
Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015
| ||||| |||||||||||||| | || || || | | || | |||||||||||||
Sbjct 281801 TTAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATG 281742
Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075
| | || ||||| || || | ||| || | ||| || |||| |||||| ||| ||||
Sbjct 281741 TCAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAA 281682
Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135
|||| || ||||| || |||||||| ||||| | || |||| | | |||| |||
Sbjct 281681 AGAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTAC 281622
Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195
| ||||| | || ||||||||||||||||| || ||||| ||||| || || ||||
Sbjct 281621 TGCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAG 281562
Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----A 19251
||| || ||| | ||| |||| || | |||| | | ||||| | |
Sbjct 281561 CATTGAAAAGAAATTCTTTCTCTTCTGGGTC----AAATATATAAGTGTCAATGAGAGTA 281506
Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311
|| |||||||||||||| |||||||| || || || || || || ||||| || | ||
Sbjct 281505 CTATACATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCC 281446
Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371
|| |||| |||||||| || ||||| || || | |||||||| || |||||||||
Sbjct 281445 TCAGTTACTTGTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCA 281386
Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431
|| |||||||| || | ||||||| ||| ||||| ||||||| | || ||
Sbjct 281385 GATGCAGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTA 281326
Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491
| ||| | || || ||||| | ||||||||||| |||||| || ||||| ||
Sbjct 281325 TCCCAGTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCA 281266
Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551
|||| || ||| | | ||| || || ||||||| ||||||||||| || || || ||
Sbjct 281265 GCTTCCTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCTTCTT 281206
Query 19552 TTATTTTCTTTAAGAATAGGTTC 19574
||||||| |||| | |||||
Sbjct 281205 GGATTTTCTCTAAGCAATGGTTC 281183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562080778876320
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