Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq296 138 9e-28 >seq296 Length=775295 Score = 138 bits (152), Expect = 9e-28 Identities = 402/609 (66%), Gaps = 20/609 (3%) Strand=Plus/Minus Query 29764 GTGGGAAAGGGTCTGGGCTCCCTCTCGA-GCTGAGTCTT-CAGCGGTTCCACGTGATCCA 29821 |||||||| | | || |||| |||| |||| ||||| || | ||| | ||||| Sbjct 26026 GTGGGAAATGTCTTTGGAACCCT-TCGAAGCTG-GTCTTTCAAAGCTTCTATGTGATTTT 25969 Query 29822 GGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGT 29881 | | | |||| ||| || | ||||| | ||| || | |||| || ||||| || | Sbjct 25968 GAAATATGTGACTGTCGCCAATCGTGTGTATAAATTCGCTGGGTTTTAAACCGGTCACAT 25909 Query 29882 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 29941 |||| |||||| ||| ||||||| ||| || || ||||| || |||||||| || |||| Sbjct 25908 GAGCTATCATGACCGTTAGGAGAGCGTAACTCGCAATGTTGAACGGTACCCCCAGTCCCA 25849 Query 29942 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG-- 29999 | || |||| || ||||| | | | || | || | | | ||| |||| || Sbjct 25848 TATCGGCCGATCTTTGGTATAACAACGAAGACAATTCGTCATTATTTACGAAAAATTGTA 25789 Query 30000 --ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30057 | ||| || || || ||||||||||| | | ||| || ||||| | Sbjct 25788 CGAGACAA----TGACAGGGTGGAAGAGCCATTTGTGGTATGTCCACAGGATTCCACGAA 25733 Query 30058 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 30117 || | ||| || | || || | || | || |||| | | | | || Sbjct 25732 CATAAGATTATCCTTCTATCATTCGGATAATTTTTGATTGTATTAATCACTTGACTCAAT 25673 Query 30118 TGATCCACCCC--CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 30175 ||||| | || ||| | || || | || | |||| | | ||||| ||||| |||| Sbjct 25672 TGATCGATTCCTTCATTCGCG--TAATTGGCTCGCATGCCTCTATACTCAGCTCCAAAAT 25615 Query 30176 GCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCC 30235 | | |||||| ||||| || | ||| |||| |||||||||||| | || | | || ||| Sbjct 25614 GACGCCACTGAAACCCATATATCGGACCCAAGTCTCCCTCTTCTCGGTCCCCAAACCCCA 25555 Query 30236 TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG--GA 30293 | | |||||| | || || |||| |||| | ||||| || |||| | |||| | || Sbjct 25554 TTCTATCCAAATACTCCCTCGAACTGTTGACATCCCATATTTTTA--CGTTTCTGGTAGA 25497 Query 30294 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30353 || ||||||| |||||| ||| | | |||||||||| |||||| || ||| | Sbjct 25496 AAGTTCTTTGGCATTTGTGCTTCCTTTTATTAACCACAGCATCTCCTCGACTACGCCACG 25437 Query 30354 CCAAAAGAC 30362 ||||||||| Sbjct 25436 CCAAAAGAC 25428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408597739652324