Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq218 113 3e-20 seq137 89.7 4e-13 >seq218 Length=661058 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || || |||||||| || || |||||||| ||||| ||||||||||| Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | | || ||||| || ||||||||||| |||| || || || || | ||| Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||||| || || | | | ||||| | || || Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||| || || ||||| |||||||| ||||| Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || ||||| || ||||| || || ||||||||||||||||| ||||| Sbjct 356226 CCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAA 356285 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || |||||||| || ||||| || || || ||||| || | ||| Sbjct 356286 AGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 356345 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||| || | | | || || | ||| || Sbjct 356346 ATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACT 356405 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | ||| |||||||| |||||||| Sbjct 356406 TCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || |||||||| || || |||||||| ||||| ||||||||||| | ||| | Sbjct 357244 AGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGACAATGTTCTA 357303 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| |||||||| ||||| |||| || ||||| || | |||| || || Sbjct 357304 CCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGAATACCTTCT 357363 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||||| || || |||| || Sbjct 357364 TTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACTTCCAGTGTG 357423 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 || ||||| || || | || || |||| Sbjct 357424 ATTGTTTTACCAGTTAGTGTCTTAACAA 357451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| |||||||||||||| ||||| || || | ||| | || ||| Sbjct 356472 ACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACCATCTTCC 356531 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || ||||| || | | ||| ||||| | |||| ||| || ||||| | Sbjct 356532 AGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGA 356591 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| ||| ||| | | | ||||| | || || || | || |||||||| Sbjct 356592 ATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGATCGTTTTA 356651 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || ||||| ||||| Sbjct 356652 CCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 >seq137 Length=480032 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 9063 TGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGAC 9122 ||| ||||| | |||| |||||||||||| ||||| || || || || | | | || Sbjct 193206 TGTTGGATATGATATTTTTTCACAAATTAACTGAGCTATTCTATCACCTATCTCTATTAC 193147 Query 9123 AAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATC 9182 ||| ||| | | ||||| ||| || | | || | ||| ||||| || || || Sbjct 193146 AAATTCTTTATTGGAATAATTAAATAATAGTACCTTAATTACACCTCTGTAGTCTTCGTC 193087 Query 9183 GATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGAT 9242 || ||||| || || ||||| || | ||||| || ||||||||||| || || || || Sbjct 193086 AATAACACCTGCTCCTACGTCTATAGAATGCTTTACGGCTAGTCCAGATCGTGGAGCAAT 193027 Query 9243 TCGACCGTAGCATCCCACCGGTAATTG 9269 |||||||| || | ||||| ||| Sbjct 193026 ACGACCGTAATGACCAATCGGTAGTTG 193000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380919085004124